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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4870 and Ac3H11_4871 overlap by 4 nucleotides
Ac3H11_4871 and Ac3H11_4872 are separated by 119 nucleotides
Ac3H11_4872 and Ac3H11_4873 are separated by 78 nucleotides
Ac3H11_4873 and Ac3H11_4874 are separated by 46 nucleotides
Ac3H11_4870 - glycoside hydrolase, family 6, at 30,620 to 31,732
_4870
Ac3H11_4871 - hypothetical protein, at 31,729 to 33,435
_4871
Ac3H11_4872 - Predicted transcriptional regulator for fatty acid degradation FadP, TetR family, at 33,555 to 34,166
_4872
Ac3H11_4873 - hypothetical protein, at 34,245 to 34,358
_4873
Ac3H11_4874 - VfmD protein, at 34,405 to 35,385
_4874
Group
Condition
Ac3H11
_4870
Ac3H11
_4871
Ac3H11
_4872
Ac3H11
_4873
Ac3H11
_4874
stress
copper (II) chloride 2 mM
-0.1
-0.1
-0.9
N.D.
+0.1
nitrogen source
D-Alanine (N)
-0.2
+0.1
-0.7
N.D.
-0.1
stress
Sisomicin 0.001 mg/ml
-0.2
-0.1
-0.5
N.D.
-0.1
stress
Cobalt chloride 0.32 mM
-0.3
+0.0
-0.3
N.D.
-0.2
carbon source
L-Lactate (C)
-0.2
+0.0
-0.4
N.D.
-0.1
carbon source
D-Lactate (C)
-0.0
-0.1
-0.2
N.D.
-0.3
carbon source
D-Gluconic Acid (C)
-0.7
+0.1
-0.0
N.D.
-0.1
stress
Zinc 1 mM
-0.3
+0.2
-0.8
N.D.
+0.3
phage
phage 93.1
-0.1
+0.2
-0.8
N.D.
+0.2
stress
perchlorate 10 mM
-0.1
+0.1
-0.5
N.D.
-0.1
stress
Bacitracin 0.008 mg/ml
+0.2
+0.0
-0.3
N.D.
-0.3
stress
Nickel (II) chloride 0.6 mM
+0.1
-0.1
-0.4
N.D.
+0.1
carbon source
pyruvate (C)
+0.3
+0.0
-0.3
N.D.
-0.2
stress
2-Furfuraldehyde 0.06 vol%
-0.1
+0.1
-0.3
N.D.
+0.2
nitrogen source
L-Leucine (N)
-0.3
+0.2
+0.1
N.D.
-0.1
carbon source
D-Ribose (C)
+0.3
+0.1
+0.1
N.D.
-0.3
carbon source
a-Ketoglutaric (C)
+0.1
+0.0
+0.3
N.D.
-0.3
carbon source
D-Fructose (C)
-0.2
-0.0
+0.3
N.D.
+0.2
pH
LB, pH10
-0.4
-0.0
+0.9
N.D.
-0.2
stress
D-Cycloserine 0.05 mg/ml
-0.5
+0.2
+0.6
N.D.
+0.0
carbon source
succinate (C)
-0.1
+0.1
+0.4
N.D.
-0.1
motility
inner cut, R2A soft agar motility assay
-0.4
+0.3
+0.3
N.D.
+0.2
stress
Paraquat dichloride 0.01 mg/ml
+0.2
+0.2
+0.2
N.D.
-0.3
stress
Cisplatin 0.005 mg/ml
-0.1
+0.2
+0.4
N.D.
-0.1
motility
inner cut, R2A soft agar motility assay
-0.4
-0.1
+0.6
N.D.
+0.4
nitrogen source
Ammonium chloride (N)
-0.1
+0.3
+0.6
N.D.
-0.2
nitrogen source
L-Alanine (N)
-0.1
+0.2
+0.7
N.D.
-0.1
phage
phage 93.2
+0.6
+0.0
+0.0
N.D.
+0.1
lb
LB
+0.4
-0.1
+0.6
N.D.
-0.1
pH
LB, pH10
+0.4
+0.2
+0.5
N.D.
-0.0
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