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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_4851 and Ac3H11_4852 are separated by 167 nucleotides
Ac3H11_4852 and Ac3H11_4853 are separated by 76 nucleotides
Ac3H11_4853 and Ac3H11_4854 are separated by 109 nucleotides
Ac3H11_4854 and Ac3H11_4855 overlap by 4 nucleotides
Ac3H11_4851 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 13,564 to 14,139
_4851
Ac3H11_4852 - Protein of unknown function DUF218, at 14,307 to 15,065
_4852
Ac3H11_4853 - Alpha/beta hydrolase fold (EC 3.8.1.5), at 15,142 to 15,930
_4853
Ac3H11_4854 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 16,040 to 16,561
_4854
Ac3H11_4855 - Uncharacterized protein conserved in bacteria, at 16,558 to 17,148
_4855
Group
Condition
Ac3H11
_4851
Ac3H11
_4852
Ac3H11
_4853
Ac3H11
_4854
Ac3H11
_4855
pH
LB, pH10
+0.0
-0.8
-0.4
-0.4
+0.1
carbon source
D-Lactate (C)
-0.2
-0.8
-0.1
+0.0
-0.0
carbon source
pyruvate (C)
-0.1
-0.7
-0.1
-0.1
+0.1
carbon source
L-Lactate (C)
-0.1
-0.8
-0.1
-0.1
+0.2
carbon source
D-Gluconic Acid (C)
-0.1
-0.8
+0.1
+0.1
-0.1
carbon source
pyruvate (C)
-0.1
-0.9
+0.2
-0.0
+0.1
stress
copper (II) chloride 1 mM
-0.1
-0.7
-0.0
+0.3
-0.1
nitrogen source
Ammonium chloride (N)
+0.1
+0.2
-0.2
-0.3
-0.3
stress
Paraquat dichloride 0.01 mg/ml
-0.2
-0.5
+0.1
+0.3
-0.2
nitrogen source
L-Threonine (N)
-0.0
+0.4
-0.3
-0.4
-0.2
carbon source
succinate (C)
-0.1
-0.7
+0.2
+0.3
+0.1
carbon source
D-Gluconic Acid (C)
+0.0
-0.5
+0.3
+0.1
+0.3
stress
Cobalt chloride 0.4 mM
+0.2
+0.2
-0.6
+0.3
+0.1
lb
LB
-0.1
+0.3
-0.5
+0.3
+0.2
stress
perchlorate 25 mM
+0.1
-0.3
+0.2
+0.4
+0.1
carbon source
D-Ribose (C)
-0.1
+0.7
-0.2
-0.0
+0.2
stress
D-Cycloserine 0.05 mg/ml
-0.1
+0.1
-0.2
+0.7
-0.0
motility
inner cut, R2A soft agar motility assay
+0.1
+0.7
-0.3
-0.2
+0.3
stress
copper (II) chloride 1 mM
+0.2
+0.2
-0.4
+0.5
+0.1
stress
Phosphomycin 0.02 mg/ml
+0.0
+0.3
-0.3
+0.6
+0.1
stress
copper (II) chloride 2 mM
-0.2
+0.6
+0.0
+0.5
+0.0
stress
Nickel (II) chloride 0.6 mM
-0.1
+0.3
+0.1
+0.6
+0.1
stress
Bacitracin 0.008 mg/ml
+0.1
+0.5
-0.0
+0.5
-0.1
stress
perchlorate 10 mM
-0.1
+0.1
+0.1
+0.7
+0.1
lb
LB
-0.0
+0.6
+0.2
+0.4
-0.0
stress
Cisplatin 0.005 mg/ml
+0.2
+0.8
+0.1
+0.1
-0.1
lb
LB
-0.2
+0.7
-0.1
+0.8
+0.0
stress
Sisomicin 0.001 mg/ml
-0.1
+0.4
+0.7
+0.7
-0.1
stress
nitrite 10 mM
+0.0
+0.4
+0.2
+0.7
+0.1
stress
Cisplatin 0.0025 mg/ml
+0.1
+1.2
+0.5
+0.5
+0.2
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