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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4843 and Ac3H11_4844 are separated by 178 nucleotides
Ac3H11_4844 and Ac3H11_4845 are separated by 88 nucleotides
Ac3H11_4845 and Ac3H11_4846 are separated by 128 nucleotides
Ac3H11_4846 and Ac3H11_4847 overlap by 4 nucleotides
Ac3H11_4843 - Universal stress family protein, at 7,343 to 7,765
_4843
Ac3H11_4844 - Sensory subunit of low CO2-induced protein complex, putative, at 7,944 to 8,882
_4844
Ac3H11_4845 - Transcriptional regulator, TetR family, at 8,971 to 9,585
_4845
Ac3H11_4846 - Transcriptional regulator, at 9,714 to 10,625
_4846
Ac3H11_4847 - hypothetical protein, at 10,622 to 10,735
_4847
Group
Condition
Ac3H11
_4843
Ac3H11
_4844
Ac3H11
_4845
Ac3H11
_4846
Ac3H11
_4847
nitrogen source
L-Alanine (N)
+0.0
-0.3
+0.4
-3.0
-5.1
stress
Bacitracin 0.008 mg/ml
-0.1
+0.1
-1.8
+0.8
-5.3
stress
Cisplatin 0.005 mg/ml
-0.1
-0.0
-0.8
+0.7
-5.4
stress
Zinc 1 mM
-0.1
-0.0
-2.1
+0.6
-2.8
stress
copper (II) chloride 1 mM
-0.0
+0.1
-1.8
+0.3
-2.7
stress
copper (II) chloride 1 mM
+0.0
-0.1
-2.3
+0.4
-2.0
nitrogen source
Uridine (N)
+0.1
+0.1
+1.0
-2.1
-3.0
stress
Phosphomycin 0.06 mg/ml
+0.1
+0.0
-2.0
+0.7
-2.7
stress
Sisomicin 0.0005 mg/ml
+0.2
+0.1
-2.8
+0.4
-1.4
lb
LB
-0.1
-0.0
-2.1
+0.3
-1.3
nitrogen source
D-Alanine (N)
-0.1
+0.4
+2.1
-2.7
-2.9
stress
Cobalt chloride 0.32 mM
+0.1
+0.0
-2.9
+0.2
-0.5
lb
LB
-0.0
-0.0
-1.9
+1.0
-2.0
carbon source
D-Glucose (C)
+0.0
+0.1
-2.3
+0.3
-1.1
stress
Phosphomycin 0.02 mg/ml
+0.0
-0.1
-1.9
+0.6
-1.2
stress
Cobalt chloride 0.32 mM
+0.2
+0.1
-2.7
+0.3
-0.3
stress
Cisplatin 0.0025 mg/ml
+0.1
-0.0
-1.3
+0.8
-1.8
stress
Paraquat dichloride 0.01 mg/ml
-0.2
+0.1
-2.4
+1.3
-1.1
lb
LB
+0.1
-0.0
-1.8
+0.5
-1.0
pH
LB, pH10
+0.4
-0.3
+0.2
-0.4
-2.0
lb
LB
+0.1
-0.0
-2.0
+0.6
-0.7
stress
Fusidic 0.001 mg/ml
+0.0
+0.1
-2.0
+0.6
-0.7
lb
LB
+0.3
+0.1
-2.0
+1.0
-1.2
stress
Chlorite 0.1 mM
+0.2
+0.0
-2.6
+1.2
-0.4
stress
A22 0.025 mg/ml
+0.2
+0.1
-2.2
+0.8
-0.5
stress
Sisomicin 0.001 mg/ml
-0.0
-0.0
-2.1
+0.9
+0.2
nitrogen source
L-Leucine (N)
+0.3
+0.3
+1.5
-0.7
-2.3
stress
perchlorate 10 mM
+0.2
-0.1
-2.0
+1.0
+0.3
nitrogen source
L-Isoleucine (N)
+0.1
+0.1
+1.8
-0.8
-1.6
stress
D-Cycloserine 0.05 mg/ml
+0.3
+0.1
+3.4
+9.2
+7.5
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