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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4841 and Ac3H11_4842 are separated by 3 nucleotides
Ac3H11_4842 and Ac3H11_4843 are separated by 114 nucleotides
Ac3H11_4843 and Ac3H11_4844 are separated by 178 nucleotides
Ac3H11_4844 and Ac3H11_4845 are separated by 88 nucleotides
Ac3H11_4841 - FIG000557: hypothetical protein co-occurring with RecR, at 5,402 to 6,370
_4841
Ac3H11_4842 - Ser/Thr protein phosphatase family protein, at 6,374 to 7,228
_4842
Ac3H11_4843 - Universal stress family protein, at 7,343 to 7,765
_4843
Ac3H11_4844 - Sensory subunit of low CO2-induced protein complex, putative, at 7,944 to 8,882
_4844
Ac3H11_4845 - Transcriptional regulator, TetR family, at 8,971 to 9,585
_4845
Group
Condition
Ac3H11
_4841
Ac3H11
_4842
Ac3H11
_4843
Ac3H11
_4844
Ac3H11
_4845
stress
Cobalt chloride 0.32 mM
+0.1
+0.0
+0.1
+0.0
-2.9
stress
Cobalt chloride 0.32 mM
-0.1
-0.0
+0.2
+0.1
-2.7
stress
copper (II) chloride 1 mM
+0.1
-0.1
+0.0
-0.1
-2.3
carbon source
D-Glucose (C)
+0.0
-0.1
-0.1
+0.0
-2.3
stress
Sisomicin 0.0005 mg/ml
+0.1
+0.1
+0.2
+0.1
-2.8
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
-0.0
-0.0
-0.2
-1.9
lb
LB
+0.0
-0.0
-0.1
-0.0
-2.1
carbon source
propionate (C)
+0.2
+0.0
-0.1
+0.2
-2.5
carbon source
D-Glucose (C)
+0.0
+0.1
+0.0
+0.1
-2.3
stress
Chlorite 0.1 mM
+0.4
-0.0
+0.2
+0.0
-2.6
stress
Paraquat dichloride 0.01 mg/ml
+0.6
-0.1
-0.2
+0.1
-2.4
stress
Sisomicin 0.001 mg/ml
+0.3
-0.0
-0.0
-0.0
-2.1
stress
Nickel (II) chloride 0.6 mM
+0.1
-0.1
+0.0
+0.1
-2.0
stress
Tetracycline 0.0001 mg/ml
+0.2
-0.1
-0.1
+0.1
-1.9
stress
Phosphomycin 0.02 mg/ml
+0.2
+0.1
+0.0
-0.1
-1.9
nitrogen source
L-Histidine (N)
+0.0
-0.1
+0.1
+0.2
-1.9
lb
LB
+0.1
+0.2
+0.1
-0.0
-2.0
stress
Bacitracin 0.008 mg/ml
+0.1
+0.1
-0.1
+0.1
-1.8
lb
LB
+0.4
+0.0
-0.0
-0.0
-1.9
stress
perchlorate 10 mM
+0.3
+0.1
+0.2
-0.1
-2.0
stress
Phosphomycin 0.06 mg/ml
+0.3
+0.1
+0.1
+0.0
-2.0
lb
LB
+0.2
+0.1
+0.1
-0.0
-1.8
stress
A22 0.025 mg/ml
+0.2
+0.2
+0.2
+0.1
-2.2
stress
copper (II) chloride 1 mM
+0.4
-0.0
-0.0
+0.1
-1.8
stress
Fusidic 0.001 mg/ml
+0.3
+0.2
+0.0
+0.1
-2.0
lb
LB
+0.4
+0.1
+0.3
+0.1
-2.0
stress
Zinc 1 mM
+1.0
+0.2
-0.1
-0.0
-2.1
nitrogen source
L-Leucine (N)
+0.0
-0.2
+0.3
+0.3
+1.5
nitrogen source
D-Alanine (N)
+0.2
+0.1
-0.1
+0.4
+2.1
stress
D-Cycloserine 0.05 mg/ml
-0.2
-0.0
+0.3
+0.1
+3.4
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