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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4840 and Ac3H11_4841 are separated by 125 nucleotides
Ac3H11_4841 and Ac3H11_4842 are separated by 3 nucleotides
Ac3H11_4842 and Ac3H11_4843 are separated by 114 nucleotides
Ac3H11_4843 and Ac3H11_4844 are separated by 178 nucleotides
Ac3H11_4840 - hypothetical protein, at 4,836 to 5,276
_4840
Ac3H11_4841 - FIG000557: hypothetical protein co-occurring with RecR, at 5,402 to 6,370
_4841
Ac3H11_4842 - Ser/Thr protein phosphatase family protein, at 6,374 to 7,228
_4842
Ac3H11_4843 - Universal stress family protein, at 7,343 to 7,765
_4843
Ac3H11_4844 - Sensory subunit of low CO2-induced protein complex, putative, at 7,944 to 8,882
_4844
Group
Condition
Ac3H11
_4840
Ac3H11
_4841
Ac3H11
_4842
Ac3H11
_4843
Ac3H11
_4844
motility
inner cut, R2A soft agar motility assay
N.D.
-0.2
-0.2
-0.1
-0.1
nitrogen source
L-Alanine (N)
N.D.
+0.2
-0.2
+0.0
-0.3
carbon source
a-Ketoglutaric (C)
N.D.
-0.2
+0.2
-0.2
+0.0
pH
LB, pH10
N.D.
+0.1
-0.2
+0.4
-0.3
stress
Cobalt chloride 0.4 mM
N.D.
-0.2
+0.2
-0.1
+0.2
carbon source
succinate (C)
N.D.
-0.0
+0.1
-0.1
+0.2
carbon source
D-Sorbitol (C)
N.D.
+0.1
-0.2
+0.2
+0.1
carbon source
L-Arabinose (C)
N.D.
-0.1
+0.3
-0.2
+0.2
motility
inner cut, R2A soft agar motility assay
N.D.
-0.3
+0.3
+0.2
-0.1
stress
D-Cycloserine 0.05 mg/ml
N.D.
-0.2
-0.0
+0.3
+0.1
stress
nitrite 10 mM
N.D.
+0.2
+0.1
+0.2
-0.1
lb
LB
N.D.
+0.4
+0.0
-0.0
-0.0
nitrogen source
L-Leucine (N)
N.D.
+0.0
-0.2
+0.3
+0.3
stress
Paraquat dichloride 0.01 mg/ml
N.D.
+0.6
-0.1
-0.2
+0.1
nitrogen source
Ammonium chloride (N)
N.D.
-0.0
+0.2
+0.3
-0.0
stress
copper (II) chloride 1 mM
N.D.
+0.4
-0.0
-0.0
+0.1
carbon source
D-Fructose (C)
N.D.
+0.2
+0.2
-0.0
+0.1
stress
nitrite 10 mM
N.D.
+0.4
-0.1
+0.3
-0.1
stress
perchlorate 10 mM
N.D.
+0.3
+0.1
+0.2
-0.1
stress
Chlorite 0.1 mM
N.D.
+0.4
-0.0
+0.2
+0.0
stress
nitrate 100 mM
N.D.
+0.1
+0.4
+0.1
-0.0
nitrogen source
D-Alanine (N)
N.D.
+0.2
+0.1
-0.1
+0.4
carbon source
D-Gluconic Acid (C)
N.D.
+0.1
+0.2
+0.2
+0.2
stress
Fusidic 0.001 mg/ml
N.D.
+0.3
+0.2
+0.0
+0.1
stress
perchlorate 25 mM
N.D.
+0.5
-0.0
+0.2
+0.0
stress
A22 0.025 mg/ml
N.D.
+0.2
+0.2
+0.2
+0.1
pH
LB, pH10
N.D.
+0.3
+0.2
+0.3
+0.1
lb
LB
N.D.
+0.4
+0.1
+0.3
+0.1
stress
Zinc 1 mM
N.D.
+1.0
+0.2
-0.1
-0.0
stress
copper (II) chloride 2 mM
N.D.
+1.4
+0.3
+0.1
-0.0
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Ac3H11_4842
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