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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4816 and Ac3H11_4817 are separated by 208 nucleotides
Ac3H11_4817 and Ac3H11_4818 are separated by 251 nucleotides
Ac3H11_4818 and Ac3H11_4819 are separated by 1008 nucleotides
Ac3H11_4819 and Ac3H11_4820 are separated by 23 nucleotides
Ac3H11_4816 - FIG00932538: hypothetical protein, at 119,028 to 119,906
_4816
Ac3H11_4817 - hypothetical protein, at 120,115 to 120,297
_4817
Ac3H11_4818 - Phosphoglycerate mutase (EC 5.4.2.1), at 120,549 to 121,241
_4818
Ac3H11_4819 - FOG: TPR repeat, at 122,250 to 123,596
_4819
Ac3H11_4820 - FIG00349859: hypothetical protein, at 123,620 to 124,228
_4820
Group
Condition
Ac3H11
_4816
Ac3H11
_4817
Ac3H11
_4818
Ac3H11
_4819
Ac3H11
_4820
nitrogen source
L-Isoleucine (N)
-0.8
-0.7
+0.2
-0.2
-0.3
stress
sodium fluoride 25 mM
-0.6
-0.5
-0.4
+0.0
-0.1
pH
LB, pH10
-1.0
-0.1
-0.1
+0.1
-0.1
motility
inner cut, R2A soft agar motility assay
-0.2
-0.6
-0.4
+0.0
-0.0
stress
nitrate 100 mM
+0.2
-0.3
-0.5
-0.2
-0.1
pH
LB, pH10
-1.1
-0.0
+0.1
+0.1
+0.1
carbon source
pyruvate (C)
-0.5
+0.3
+0.1
-0.0
-0.5
stress
Cisplatin 0.005 mg/ml
-0.4
-0.4
+0.3
+0.1
+0.0
carbon source
D-Lactate (C)
+0.4
+0.2
-0.5
-0.1
-0.2
carbon source
D-Glucose (C)
+0.5
+0.1
-0.5
+0.1
-0.1
nitrogen source
L-tyrosine (N)
-0.3
+0.1
+0.4
+0.2
-0.2
stress
copper (II) chloride 1 mM
-0.4
+0.4
-0.3
+0.3
+0.2
temperature
LB 30C
+0.6
-0.2
-0.3
-0.1
+0.3
nitrogen source
D-Alanine (N)
+0.1
+0.6
+0.3
-0.1
-0.4
stress
Sisomicin 0.001 mg/ml
+0.7
+0.1
-0.6
+0.4
-0.0
stress
Bacitracin 0.008 mg/ml
+0.5
+0.2
-0.4
+0.4
-0.2
stress
copper (II) chloride 2 mM
+1.4
-0.1
-1.0
+0.2
+0.1
carbon source
a-Ketoglutaric (C)
-0.3
+0.8
+0.4
+0.2
-0.3
stress
5-Hydroxymethylfurfural 5 mM
+0.5
-0.2
+0.6
-0.1
-0.0
nitrogen source
Ammonium chloride (N)
+0.2
-0.4
+0.7
-0.1
+0.6
motility
inner cut, R2A soft agar motility assay
+1.0
+0.3
-0.5
+0.1
+0.1
stress
A22 0.025 mg/ml
+0.7
-0.2
-0.0
+0.3
+0.2
stress
Bacitracin 0.016 mg/ml
+0.7
-0.2
+0.3
+0.0
+0.3
stress
sodium fluoride 20 mM
+0.2
-0.1
+0.7
+0.2
+0.2
nitrogen source
L-Histidine (N)
+0.0
+0.4
+0.7
+0.2
-0.0
carbon source
a-Ketoglutaric (C)
+0.6
+0.5
+0.1
+0.0
-0.1
motility
inner cut, R2A soft agar motility assay
+1.1
+0.1
-0.3
-0.1
+0.5
phage
phage 93.2
+0.4
+0.1
+0.6
+0.2
-0.0
lb
LB
+0.4
+0.1
+0.8
+0.1
-0.0
stress
Phosphomycin 0.06 mg/ml
+0.6
+0.5
-0.0
+0.4
-0.0
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Ac3H11_4818
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