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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_474 and Ac3H11_475 are separated by 150 nucleotides
Ac3H11_475 and Ac3H11_476 are separated by 222 nucleotides
Ac3H11_476 and Ac3H11_477 are separated by 48 nucleotides
Ac3H11_477 and Ac3H11_478 overlap by 4 nucleotides
Ac3H11_474 - probable membrane protein NMA1176, at 170,593 to 171,006
_474
Ac3H11_475 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 171,157 to 172,233
_475
Ac3H11_476 - hypothetical protein, at 172,456 to 172,608
_476
Ac3H11_477 - Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-), at 172,657 to 174,171
_477
Ac3H11_478 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 174,168 to 174,953
_478
Group
Condition
Ac3H11
_474
Ac3H11
_475
Ac3H11
_476
Ac3H11
_477
Ac3H11
_478
pH
LB, pH10
-0.1
-0.1
-0.7
-1.9
+0.4
carbon source
succinate (C)
-0.1
-0.7
-0.4
-0.8
-0.2
carbon source
L-Malic (C)
-0.1
-0.9
+0.0
-0.6
+0.1
carbon source
pyruvate (C)
+0.0
-0.3
-0.2
-0.8
+0.1
carbon source
D-Lactate (C)
-0.2
-0.5
+0.0
-0.4
-0.1
stress
nitrate 100 mM
+0.1
-0.3
-0.4
-0.4
-0.2
phage
phage 93.1
-0.3
-0.1
-0.2
-0.7
+0.1
nitrogen source
L-tyrosine (N)
+0.1
+0.0
-0.2
-1.1
+0.1
stress
Cisplatin 0.005 mg/ml
-0.2
+0.4
-0.9
-0.0
-0.2
pH
LB, pH10
+0.2
-0.3
+0.2
-1.2
+0.2
stress
D-Cycloserine 0.05 mg/ml
-0.4
+0.4
-0.2
-0.3
-0.4
carbon source
pyruvate (C)
+0.1
-0.4
-0.1
-0.6
+0.2
carbon source
Tween 20 (C)
+0.1
-1.2
+0.3
+0.0
+0.1
carbon source
D,L-Lactate (C)
-0.0
-0.5
-0.2
-0.2
+0.3
phage
phage 93.1
-0.3
+0.3
+0.2
-0.5
-0.2
carbon source
D,L-Lactate (C)
+0.1
-0.5
+0.2
-0.3
+0.1
carbon source
succinate (C)
+0.1
-1.1
+0.1
+0.4
+0.4
carbon source
succinate (C)
-0.1
-1.0
+0.0
+0.6
+0.4
stress
perchlorate 10 mM
+0.0
+0.1
+0.7
-0.2
-0.4
stress
copper (II) chloride 2 mM
+0.2
+0.5
-0.3
-0.3
+0.2
stress
Cisplatin 0.0025 mg/ml
+0.3
+0.1
+0.2
-0.3
+0.2
carbon source
D-Glucose (C)
+0.0
+0.6
+0.2
-0.3
+0.1
carbon source
D-Glucose (C)
+0.1
+0.5
+0.3
-0.3
+0.2
carbon source
L-Glutamine (C)
+0.1
+0.8
+0.4
-0.6
-0.1
stress
copper (II) chloride 1 mM
+0.3
+0.4
+0.4
-0.2
-0.1
nitrogen source
L-Alanine (N)
+0.2
+0.3
+0.2
-0.3
+0.4
nitrogen source
L-Histidine (N)
-0.1
+1.3
-0.1
-0.2
+0.0
nitrogen source
L-Threonine (N)
+0.3
+0.5
+0.0
-0.1
+0.3
carbon source
D-Galactose (C)
+0.3
+0.2
+0.2
+0.3
+0.3
nitrogen source
L-Isoleucine (N)
+0.5
+0.6
+0.1
+0.2
+0.3
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