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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4735 and Ac3H11_4736 are separated by 6 nucleotides
Ac3H11_4736 and Ac3H11_4737 overlap by 4 nucleotides
Ac3H11_4737 and Ac3H11_4738 overlap by 8 nucleotides
Ac3H11_4738 and Ac3H11_4739 are separated by 164 nucleotides
Ac3H11_4735 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19), at 42,520 to 42,909
_4735
Ac3H11_4736 - Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 42,916 to 43,290
_4736
Ac3H11_4737 - Probable transmembrane protein, at 43,287 to 43,673
_4737
Ac3H11_4738 - Ferredoxin reductase, at 43,666 to 44,715
_4738
Ac3H11_4739 - FIG146285: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 44,880 to 45,236
_4739
Group
Condition
Ac3H11
_4735
Ac3H11
_4736
Ac3H11
_4737
Ac3H11
_4738
Ac3H11
_4739
stress
copper (II) chloride 2 mM
N.D.
N.D.
-0.7
-0.3
-0.7
stress
Paraquat dichloride 0.01 mg/ml
N.D.
N.D.
-1.1
-0.0
-0.4
pH
LB, pH5
N.D.
N.D.
-0.5
-0.2
-0.4
stress
perchlorate 10 mM
N.D.
N.D.
-0.5
-0.0
-0.6
stress
Tetracycline 0.0001 mg/ml
N.D.
N.D.
-0.6
-0.3
-0.2
stress
copper (II) chloride 1 mM
N.D.
N.D.
-0.7
-0.2
-0.2
stress
nitrite 10 mM
N.D.
N.D.
-0.7
-0.1
-0.2
stress
Bacitracin 0.032 mg/ml
N.D.
N.D.
-0.8
-0.2
+0.0
motility
inner cut, R2A soft agar motility assay
N.D.
N.D.
-0.2
-0.8
-0.0
pH
LB, pH9
N.D.
N.D.
-0.4
-0.2
-0.3
pH
LB, pH5
N.D.
N.D.
-0.5
-0.2
-0.3
stress
Cisplatin 0.0025 mg/ml
N.D.
N.D.
-1.1
+0.1
-0.0
stress
Zinc 1 mM
N.D.
N.D.
-0.9
+0.1
-0.2
stress
sodium fluoride 50 mM
N.D.
N.D.
-0.3
-0.5
-0.1
stress
nitrate 20 mM
N.D.
N.D.
-0.3
-0.4
-0.3
stress
Chloramphenicol 0.001 mg/ml
N.D.
N.D.
-0.5
-0.1
-0.3
stress
Chlorite 0.1 mM
N.D.
N.D.
-0.6
-0.2
-0.2
nitrogen source
L-Alanine (N)
N.D.
N.D.
-0.4
+0.1
-0.5
stress
Fusidic 0.001 mg/ml
N.D.
N.D.
-0.7
-0.1
+0.1
stress
Bacitracin 0.016 mg/ml
N.D.
N.D.
-0.9
+0.2
-0.0
stress
Bacitracin 0.008 mg/ml
N.D.
N.D.
-0.7
+0.3
-0.1
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
+0.2
-0.1
-0.6
stress
Phosphomycin 0.02 mg/ml
N.D.
N.D.
-0.4
-0.3
+0.2
stress
nitrate 45 mM
N.D.
N.D.
-0.3
+0.3
-0.4
stress
Cephalothin 0.025 mg/ml
N.D.
N.D.
-0.3
+0.3
-0.4
pH
LB, pH8
N.D.
N.D.
-0.3
+0.3
-0.3
carbon source
D,L-Lactate (C)
N.D.
N.D.
-0.3
+0.6
+0.1
stress
Cisplatin 0.005 mg/ml
N.D.
N.D.
-0.4
+0.3
+0.5
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
+0.4
+0.5
+0.9
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
+0.5
+0.3
+1.0
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