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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_4701 and Ac3H11_4702 are separated by 618 nucleotides
Ac3H11_4702 and Ac3H11_4703 are separated by 538 nucleotides
Ac3H11_4703 and Ac3H11_4704 are separated by 19 nucleotides
Ac3H11_4704 and Ac3H11_4705 are separated by 247 nucleotides
Ac3H11_4701 - Type IV pilus biogenesis protein PilM, at 5,661 to 6,740
_4701
Ac3H11_4702 - Type IV pilus biogenesis protein PilO, at 7,359 to 8,021
_4702
Ac3H11_4703 - Type IV pilus biogenesis protein PilQ, at 8,560 to 10,695
_4703
Ac3H11_4704 - EF hand domain/PKD domain protein, at 10,715 to 12,190
_4704
Ac3H11_4705 - 3-dehydroquinate synthase (EC 4.2.3.4), at 12,438 to 13,541
_4705
Group
Condition
Ac3H11
_4701
Ac3H11
_4702
Ac3H11
_4703
Ac3H11
_4704
Ac3H11
_4705
carbon source
D-Gluconic Acid (C)
-0.9
-0.8
-0.5
+0.3
-3.4
carbon source
D-Ribose (C)
-0.4
-0.4
-0.4
-0.1
-4.0
carbon source
succinate (C)
-0.7
-0.2
-0.2
-0.1
-3.9
carbon source
succinate (C)
-0.6
-0.1
-0.1
+0.0
-4.2
carbon source
D-Gluconic Acid (C)
-0.7
-0.5
-0.5
+0.2
-3.4
carbon source
propionate (C)
-0.4
-0.3
-0.4
+0.0
-3.8
nitrogen source
L-Arginine (N)
-0.8
-0.3
-0.3
-0.2
-3.1
nitrogen source
L-tyrosine (N)
-1.0
-0.4
-0.2
-0.3
-3.0
carbon source
D-Ribose (C)
-0.4
-0.1
-0.3
+0.0
-3.9
carbon source
D,L-Lactate (C)
-0.0
-0.1
+0.0
+0.0
-4.4
carbon source
D-Lactate (C)
-0.3
+0.1
+0.0
+0.2
-4.1
carbon source
L-Lactate (C)
-0.2
+0.0
+0.0
+0.1
-4.1
carbon source
D,L-Lactate (C)
-0.2
-0.1
-0.0
+0.0
-3.8
carbon source
D-Fructose (C)
+0.0
+0.1
+0.1
+0.1
-4.1
carbon source
L-Lactate (C)
-0.1
+0.1
+0.2
+0.2
-4.2
carbon source
pyruvate (C)
-0.0
+0.1
+0.1
+0.2
-4.0
carbon source
D-Fructose (C)
+0.0
+0.2
+0.1
+0.3
-4.0
carbon source
D-Galactose (C)
+0.2
-0.0
+0.1
+0.0
-3.7
carbon source
D-Glucose (C)
+0.1
+0.2
+0.1
+0.2
-4.0
carbon source
D-Lactate (C)
-0.0
+0.1
+0.0
+0.2
-3.6
carbon source
L-Arabinose (C)
+0.1
+0.4
+0.1
+0.1
-4.0
carbon source
pyruvate (C)
-0.0
+0.4
+0.2
+0.2
-3.9
carbon source
D-Galactose (C)
-0.0
+0.3
+0.1
-0.0
-3.5
carbon source
L-Arabinose (C)
+0.2
+0.2
+0.1
+0.1
-3.6
carbon source
D-Lactate (C)
-0.0
+0.1
+0.2
+0.2
-3.3
carbon source
D-Glucose (C)
+0.2
+0.3
+0.2
+0.2
-3.6
nitrogen source
L-Threonine (N)
+0.4
+0.3
+0.3
+0.1
-3.5
carbon source
L-Glutamine (C)
+0.4
+0.4
+0.3
-0.0
-3.2
nitrogen source
L-Histidine (N)
+0.5
+0.3
+0.2
-0.1
-2.8
stress
D-Cycloserine 0.05 mg/ml
+0.5
+0.4
+0.4
+0.4
+3.6
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