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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4700 and Ac3H11_4701 are separated by 376 nucleotides
Ac3H11_4701 and Ac3H11_4702 are separated by 618 nucleotides
Ac3H11_4702 and Ac3H11_4703 are separated by 538 nucleotides
Ac3H11_4703 and Ac3H11_4704 are separated by 19 nucleotides
Ac3H11_4700 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 2,996 to 5,284
_4700
Ac3H11_4701 - Type IV pilus biogenesis protein PilM, at 5,661 to 6,740
_4701
Ac3H11_4702 - Type IV pilus biogenesis protein PilO, at 7,359 to 8,021
_4702
Ac3H11_4703 - Type IV pilus biogenesis protein PilQ, at 8,560 to 10,695
_4703
Ac3H11_4704 - EF hand domain/PKD domain protein, at 10,715 to 12,190
_4704
Group
Condition
Ac3H11
_4700
Ac3H11
_4701
Ac3H11
_4702
Ac3H11
_4703
Ac3H11
_4704
carbon source
D-Gluconic Acid (C)
N.D.
-0.9
-0.8
-0.5
+0.3
nitrogen source
L-tyrosine (N)
N.D.
-1.0
-0.4
-0.2
-0.3
pH
LB, pH10
N.D.
-0.5
-0.4
+0.0
-0.9
nitrogen source
L-Arginine (N)
N.D.
-0.8
-0.3
-0.3
-0.2
carbon source
D-Gluconic Acid (C)
N.D.
-0.7
-0.5
-0.5
+0.2
carbon source
D-Ribose (C)
N.D.
-0.4
-0.4
-0.4
-0.1
carbon source
succinate (C)
N.D.
-0.7
-0.2
-0.2
-0.1
carbon source
propionate (C)
N.D.
-0.4
-0.3
-0.4
+0.0
pH
LB, pH10
N.D.
-0.3
+0.2
+0.1
-0.8
carbon source
D-Ribose (C)
N.D.
-0.4
-0.1
-0.3
+0.0
carbon source
succinate (C)
N.D.
-0.6
-0.1
-0.1
+0.0
stress
Cobalt chloride 0.16 mM
N.D.
-0.2
+0.3
+0.0
-0.4
stress
Nickel (II) chloride 0.6 mM
N.D.
-0.1
+0.2
+0.1
-0.4
lb
LB
N.D.
-0.2
+0.3
+0.2
-0.3
stress
Cobalt chloride 0.32 mM
N.D.
-0.2
+0.4
+0.1
-0.3
pH
LB, pH5
N.D.
+0.1
+0.0
+0.3
-0.4
stress
Fusidic 0.001 mg/ml
N.D.
+0.0
+0.3
+0.2
-0.3
stress
Sisomicin 0.0005 mg/ml
N.D.
+0.1
+0.5
+0.3
-0.5
lb
LB
N.D.
+0.1
+0.4
+0.3
-0.2
carbon source
D-Glucose (C)
N.D.
+0.2
+0.3
+0.2
+0.2
phage
phage 93.2
N.D.
+0.4
+0.3
+0.1
+0.1
stress
Dimethyl Sulfoxide 6 vol%
N.D.
+0.1
+0.1
+0.1
+0.6
stress
nitrate 100 mM
N.D.
+0.4
+0.3
+0.2
-0.0
nitrogen source
L-Histidine (N)
N.D.
+0.5
+0.3
+0.2
-0.1
stress
Tetracycline 0.00005 mg/ml
N.D.
+0.4
+0.2
+0.3
+0.0
carbon source
L-Glutamine (C)
N.D.
+0.4
+0.4
+0.3
-0.0
nitrogen source
L-Threonine (N)
N.D.
+0.4
+0.3
+0.3
+0.1
stress
Doxycycline hyclate 0.000025 mg/ml
N.D.
+0.7
+0.3
+0.5
+0.0
stress
D-Cycloserine 0.05 mg/ml
N.D.
+0.5
+0.4
+0.4
+0.4
stress
Tetracycline 0.0001 mg/ml
N.D.
+1.1
+0.7
+0.8
-0.1
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