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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_45 and Ac3H11_46 are separated by 127 nucleotides
Ac3H11_46 and Ac3H11_47 are separated by 47 nucleotides
Ac3H11_47 and Ac3H11_48 are separated by 99 nucleotides
Ac3H11_48 and Ac3H11_49 are separated by 200 nucleotides
Ac3H11_45 - hypothetical protein, at 42,129 to 42,263
_45
Ac3H11_46 - Cysteinyl-tRNA synthetase (EC 6.1.1.16), at 42,391 to 43,764
_46
Ac3H11_47 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 43,812 to 44,486
_47
Ac3H11_48 - Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2), at 44,586 to 45,563
_48
Ac3H11_49 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 45,764 to 47,614
_49
Group
Condition
Ac3H11
_45
Ac3H11
_46
Ac3H11
_47
Ac3H11
_48
Ac3H11
_49
stress
Tetracycline 0.0001 mg/ml
-0.9
N.D.
-3.4
N.D.
+0.1
motility
inner cut, R2A soft agar motility assay
-0.4
N.D.
-2.6
N.D.
+0.1
motility
inner cut, R2A soft agar motility assay
-0.8
N.D.
-2.0
N.D.
+0.0
temperature
LB 30C
-0.0
N.D.
-2.4
N.D.
+0.1
pH
LB, pH7
+0.1
N.D.
-2.4
N.D.
+0.1
stress
5-Hydroxymethylfurfural 5 mM
+0.1
N.D.
-1.9
N.D.
+0.0
pH
LB, pH5
+0.3
N.D.
-2.1
N.D.
+0.1
stress
copper (II) chloride 1 mM
+1.5
N.D.
-2.9
N.D.
-0.1
stress
Aluminum chloride 4 mM
+1.2
N.D.
-2.7
N.D.
+0.1
stress
Bacitracin 0.008 mg/ml
+1.2
N.D.
-2.7
N.D.
+0.2
carbon source
succinate (C)
+0.7
N.D.
-1.5
N.D.
+0.0
stress
Cobalt chloride 0.4 mM
-1.0
N.D.
+0.6
N.D.
-0.3
lb
LB
+1.1
N.D.
-1.5
N.D.
+0.0
stress
Bacitracin 0.016 mg/ml
+1.2
N.D.
-1.2
N.D.
+0.0
stress
Bacitracin 0.032 mg/ml
+1.2
N.D.
-0.9
N.D.
+0.0
lb
LB
+1.6
N.D.
-1.0
N.D.
+0.0
stress
Nickel (II) chloride 0.6 mM
+1.4
N.D.
-0.6
N.D.
-0.0
stress
Aluminum chloride 2 mM
+1.9
N.D.
-1.1
N.D.
+0.0
stress
Cisplatin 0.0025 mg/ml
+1.2
N.D.
-0.5
N.D.
+0.2
stress
Phosphomycin 0.06 mg/ml
+1.6
N.D.
-0.3
N.D.
+0.0
nitrogen source
L-Threonine (N)
-0.5
N.D.
+1.9
N.D.
+0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
+1.9
N.D.
-0.4
N.D.
+0.0
nitrogen source
D-Alanine (N)
-0.4
N.D.
+2.2
N.D.
-0.2
stress
Cobalt chloride 0.32 mM
+1.7
N.D.
+0.1
N.D.
-0.0
stress
Cobalt chloride 0.16 mM
+1.4
N.D.
+0.3
N.D.
+0.0
pH
LB, pH10
+1.3
N.D.
+0.3
N.D.
+0.2
stress
Cobalt chloride 0.32 mM
+1.7
N.D.
+0.1
N.D.
+0.0
stress
D-Cycloserine 0.05 mg/ml
+0.7
N.D.
+1.2
N.D.
+0.3
stress
Paraquat dichloride 0.01 mg/ml
+1.4
N.D.
+0.6
N.D.
+0.2
pH
LB, pH10
+1.3
N.D.
+1.0
N.D.
+0.0
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