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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4677 and Ac3H11_4678 are separated by 81 nucleotides
Ac3H11_4678 and Ac3H11_4679 are separated by 122 nucleotides
Ac3H11_4679 and Ac3H11_4680 are separated by 65 nucleotides
Ac3H11_4680 and Ac3H11_4681 are separated by 385 nucleotides
Ac3H11_4677 - D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1), at 285,632 to 286,084
_4677
Ac3H11_4678 - membrane protein, putative, at 286,166 to 286,906
_4678
Ac3H11_4679 - probable outer membrane secretion protein - Rhodobacter capsulatus, at 287,029 to 288,759
_4679
Ac3H11_4680 - probable outer membrane secretion protein - Rhodobacter capsulatus, at 288,825 to 290,780
_4680
Ac3H11_4681 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 291,166 to 291,627
_4681
Group
Condition
Ac3H11
_4677
Ac3H11
_4678
Ac3H11
_4679
Ac3H11
_4680
Ac3H11
_4681
pH
LB, pH10
-0.4
-0.5
-0.3
-0.2
N.D.
pH
LB, pH10
-0.2
-0.7
+0.0
-0.3
N.D.
nitrogen source
D-Alanine (N)
-0.4
-0.5
-0.1
+0.0
N.D.
carbon source
a-Ketoglutaric (C)
-0.3
-0.6
-0.0
+0.0
N.D.
stress
Cobalt chloride 0.32 mM
-0.3
-0.2
-0.1
-0.2
N.D.
carbon source
D-Lactate (C)
-0.2
-0.5
-0.0
+0.1
N.D.
stress
D-Cycloserine 0.05 mg/ml
-0.5
+0.2
+0.1
+0.1
N.D.
stress
Cisplatin 0.005 mg/ml
+0.8
-0.7
-0.2
-0.0
N.D.
stress
Cisplatin 0.0025 mg/ml
+0.8
-0.7
+0.0
-0.1
N.D.
stress
Phosphomycin 0.06 mg/ml
+0.4
-0.3
+0.0
-0.1
N.D.
motility
inner cut, R2A soft agar motility assay
+0.2
-0.3
+0.2
+0.1
N.D.
lb
LB
+0.0
+0.5
-0.1
-0.2
N.D.
temperature
LB 23C
-0.3
+0.4
+0.0
+0.1
N.D.
stress
Cobalt chloride 0.32 mM
-0.2
+0.4
-0.0
+0.1
N.D.
pH
LB, pH5
-0.3
-0.1
+0.2
+0.4
N.D.
nitrogen source
Ammonium chloride (N)
+0.4
-0.4
+0.0
+0.2
N.D.
lb
LB
-0.4
+0.6
+0.0
+0.0
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.0
+0.5
-0.0
-0.2
N.D.
stress
copper (II) chloride 1 mM
+0.5
-0.2
+0.1
+0.0
N.D.
motility
inner cut, R2A soft agar motility assay
+0.4
-0.2
+0.2
+0.1
N.D.
stress
nitrate 100 mM
-0.2
+0.4
+0.1
+0.1
N.D.
pH
LB, pH5
-0.1
-0.2
+0.3
+0.5
N.D.
nitrogen source
L-Alanine (N)
-0.1
+0.6
+0.0
+0.0
N.D.
carbon source
succinate (C)
+0.3
+0.4
-0.0
-0.1
N.D.
carbon source
a-Ketoglutaric (C)
-0.2
+0.8
-0.1
+0.1
N.D.
stress
Chlorite 0.1 mM
+0.6
+0.1
-0.0
+0.0
N.D.
stress
Cobalt chloride 0.4 mM
+0.1
+0.5
+0.1
+0.0
N.D.
carbon source
L-Arabinose (C)
+0.3
+0.4
+0.2
+0.1
N.D.
stress
Bacitracin 0.032 mg/ml
-0.0
+0.7
+0.2
+0.2
N.D.
stress
nitrite 10 mM
+0.6
+0.4
-0.0
+0.0
N.D.
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