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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4654 and Ac3H11_4655 are separated by 45 nucleotides
Ac3H11_4655 and Ac3H11_4656 are separated by 3 nucleotides
Ac3H11_4656 and Ac3H11_4657 are separated by 162 nucleotides
Ac3H11_4657 and Ac3H11_4658 are separated by 193 nucleotides
Ac3H11_4654 - Organic hydroperoxide resistance protein, at 262,134 to 262,577
_4654
Ac3H11_4655 - Organic hydroperoxide resistance transcriptional regulator, at 262,623 to 263,087
_4655
Ac3H11_4656 - hypothetical protein, at 263,091 to 263,219
_4656
Ac3H11_4657 - Enoyl-CoA hydratase (EC 4.2.1.17), at 263,382 to 264,200
_4657
Ac3H11_4658 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157), at 264,394 to 265,242
_4658
Group
Condition
Ac3H11
_4654
Ac3H11
_4655
Ac3H11
_4656
Ac3H11
_4657
Ac3H11
_4658
stress
Doxycycline hyclate 0.000025 mg/ml
-0.1
-0.1
-0.8
-0.5
-0.1
stress
copper (II) chloride 2 mM
-0.7
+0.2
-0.3
-0.3
-0.2
carbon source
succinate (C)
-0.7
+0.0
+0.1
-0.7
+0.1
carbon source
L-Arabinose (C)
-0.4
+0.2
-0.9
-0.3
+0.3
carbon source
D-Gluconic Acid (C)
-0.2
-0.1
-0.6
-0.3
+0.3
nitrogen source
Ammonium chloride (N)
-0.2
-0.4
+0.7
-0.6
-0.5
stress
Cephalothin 0.01 mg/ml
+0.3
-0.1
-0.8
-0.2
-0.2
stress
nitrite 10 mM
-0.7
+0.1
+0.4
-0.3
-0.4
pH
LB, pH10
+0.1
-0.4
-0.7
-0.1
+0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
-1.0
-0.1
+0.4
+0.1
-0.0
stress
Fusidic 0.001 mg/ml
-0.9
+0.3
+0.3
-0.2
-0.1
lb
LB
-0.6
-0.4
+0.2
-0.1
+0.2
nitrogen source
L-Alanine (N)
+0.9
-0.1
-0.5
-0.7
-0.1
stress
Cisplatin 0.0025 mg/ml
-0.0
-0.1
-0.8
+0.5
+0.0
stress
Nickel (II) chloride 0.6 mM
-0.4
-0.4
+0.3
+0.4
-0.2
stress
Bacitracin 0.032 mg/ml
-1.1
+0.4
+0.7
-0.1
-0.0
motility
inner cut, R2A soft agar motility assay
+0.1
+0.7
-0.3
-0.2
-0.3
stress
Nickel (II) chloride 0.8 mM
+0.5
+0.0
-0.8
+0.3
+0.0
lb
LB
-0.5
+0.5
-0.1
+0.4
-0.1
motility
inner cut, R2A soft agar motility assay
-0.5
+0.5
+0.2
+0.2
-0.3
stress
Bacitracin 0.008 mg/ml
+0.2
-0.4
+0.9
-0.2
+0.2
phage
phage 93.2
+0.4
-0.4
+0.2
+0.3
+0.2
stress
perchlorate 10 mM
+0.4
+0.2
+0.9
-0.6
-0.0
motility
inner cut, R2A soft agar motility assay
+0.2
+0.4
-0.4
+0.6
+0.2
carbon source
L-Arabinose (C)
+0.3
-0.4
+0.8
+0.4
-0.1
stress
Sisomicin 0.001 mg/ml
+0.2
+0.0
+1.0
-0.3
+0.2
carbon source
a-Ketoglutaric (C)
-0.0
+0.6
+0.4
+0.4
-0.0
stress
A22 0.025 mg/ml
+0.2
+0.4
+1.0
-0.1
-0.1
pH
LB, pH10
+0.2
+0.0
+0.5
+0.5
+0.4
stress
Cisplatin 0.005 mg/ml
+0.7
+0.5
+1.5
-0.4
-0.4
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