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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4651 and Ac3H11_4652 are separated by 1 nucleotides
Ac3H11_4652 and Ac3H11_4653 are separated by 134 nucleotides
Ac3H11_4653 and Ac3H11_4654 are separated by 3 nucleotides
Ac3H11_4654 and Ac3H11_4655 are separated by 45 nucleotides
Ac3H11_4651 - serine/threonine protein kinase, at 259,410 to 260,849
_4651
Ac3H11_4652 - Mlr6579 protein, at 260,851 to 261,609
_4652
Ac3H11_4653 - Mll3930 protein, at 261,744 to 262,130
_4653
Ac3H11_4654 - Organic hydroperoxide resistance protein, at 262,134 to 262,577
_4654
Ac3H11_4655 - Organic hydroperoxide resistance transcriptional regulator, at 262,623 to 263,087
_4655
Group
Condition
Ac3H11
_4651
Ac3H11
_4652
Ac3H11
_4653
Ac3H11
_4654
Ac3H11
_4655
carbon source
pyruvate (C)
-0.0
-0.3
+0.0
-0.6
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.1
+0.0
-0.0
-1.0
-0.1
lb
LB
-0.0
-0.0
+0.1
-0.6
-0.4
stress
sodium fluoride 25 mM
+0.1
-0.2
+0.1
-0.6
-0.1
stress
copper (II) chloride 2 mM
+0.1
-0.1
-0.2
-0.7
+0.2
stress
Bacitracin 0.032 mg/ml
+0.1
+0.1
-0.1
-1.1
+0.4
carbon source
D-Galactose (C)
-0.1
-0.1
-0.0
-0.6
+0.2
stress
Fusidic 0.001 mg/ml
+0.1
+0.1
-0.1
-0.9
+0.3
stress
Nickel (II) chloride 0.6 mM
+0.1
-0.0
+0.2
-0.4
-0.4
carbon source
D-Gluconic Acid (C)
+0.1
-0.4
+0.2
-0.2
-0.1
carbon source
succinate (C)
+0.2
-0.1
+0.1
-0.7
+0.0
stress
nitrite 10 mM
+0.2
-0.1
+0.1
-0.7
+0.1
nitrogen source
Ammonium chloride (N)
+0.3
+0.3
-0.4
-0.2
-0.4
phage
phage 93.1
+0.4
+0.1
+0.1
-0.6
-0.2
nitrogen source
L-Isoleucine (N)
+0.2
+0.3
-0.4
-0.3
+0.1
lb
LB
-0.0
-0.3
+0.2
-0.5
+0.5
motility
inner cut, R2A soft agar motility assay
+0.0
+0.2
-0.3
-0.5
+0.5
phage
phage 93.2
-0.1
-0.0
+0.2
+0.4
-0.4
carbon source
D-Gluconic Acid (C)
-0.1
+0.2
+0.2
-0.3
+0.2
stress
Chlorite 0.1 mM
+0.4
+0.1
+0.1
-0.3
+0.1
carbon source
L-Arabinose (C)
+0.1
-0.1
+0.2
-0.2
+0.4
motility
inner cut, R2A soft agar motility assay
-0.2
+0.3
-0.3
+0.2
+0.4
pH
LB, pH10
+0.1
+0.3
+0.4
+0.1
-0.4
stress
nitrate 45 mM
-0.1
-0.2
+0.1
+0.4
+0.3
carbon source
a-Ketoglutaric (C)
+0.2
+0.0
+0.1
-0.0
+0.6
stress
Nickel (II) chloride 0.8 mM
-0.0
+0.4
+0.2
+0.5
+0.0
motility
inner cut, R2A soft agar motility assay
+0.5
-0.2
+0.1
+0.1
+0.7
nitrogen source
L-Alanine (N)
+0.1
-0.1
+0.3
+0.9
-0.1
stress
A22 0.025 mg/ml
+0.3
+0.3
+0.0
+0.2
+0.4
stress
Cisplatin 0.005 mg/ml
-0.0
+0.3
+0.3
+0.7
+0.5
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