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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_462 and Ac3H11_463 overlap by 47 nucleotides
Ac3H11_463 and Ac3H11_464 overlap by 1 nucleotides
Ac3H11_464 and Ac3H11_465 are separated by 108 nucleotides
Ac3H11_465 and Ac3H11_466 are separated by 92 nucleotides
Ac3H11_462 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 152,259 to 153,602
_462
Ac3H11_463 - Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog, at 153,556 to 154,923
_463
Ac3H11_464 - Probable inner membrane transmembrane protein, at 154,923 to 156,623
_464
Ac3H11_465 - LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent, at 156,732 to 156,986
_465
Ac3H11_466 - Transcription termination factor Rho, at 157,079 to 158,341
_466
Group
Condition
Ac3H11
_462
Ac3H11
_463
Ac3H11
_464
Ac3H11
_465
Ac3H11
_466
nitrogen source
L-Isoleucine (N)
-5.9
+0.2
N.D.
N.D.
N.D.
nitrogen source
L-Alanine (N)
-5.4
+0.1
N.D.
N.D.
N.D.
lb
LB
-2.9
+0.0
N.D.
N.D.
N.D.
nitrogen source
L-Leucine (N)
-2.2
+0.1
N.D.
N.D.
N.D.
carbon source
D-Lactate (C)
-1.8
+0.0
N.D.
N.D.
N.D.
stress
Phosphomycin 0.02 mg/ml
-1.5
-0.1
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
-1.6
+0.1
N.D.
N.D.
N.D.
carbon source
succinate (C)
-1.4
-0.1
N.D.
N.D.
N.D.
carbon source
D-Galactose (C)
-1.6
+0.0
N.D.
N.D.
N.D.
stress
D-Cycloserine 0.05 mg/ml
-1.4
-0.0
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.32 mM
-1.2
-0.1
N.D.
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-1.2
-0.0
N.D.
N.D.
N.D.
carbon source
pyruvate (C)
-1.3
+0.0
N.D.
N.D.
N.D.
stress
sodium fluoride 25 mM
-1.3
+0.1
N.D.
N.D.
N.D.
nitrogen source
Ammonium chloride (N)
-1.2
-0.0
N.D.
N.D.
N.D.
stress
Ceftazidime 0.01 mg/ml
-1.1
-0.0
N.D.
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
-1.1
-0.1
N.D.
N.D.
N.D.
stress
Aluminum chloride 2 mM
-0.9
-0.2
N.D.
N.D.
N.D.
carbon source
Tween 20 (C)
-1.1
+0.0
N.D.
N.D.
N.D.
pH
LB, pH5
-1.0
-0.0
N.D.
N.D.
N.D.
carbon source
pyruvate (C)
-1.0
-0.0
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.4 mM
-1.0
+0.0
N.D.
N.D.
N.D.
pH
LB, pH9
-0.8
-0.2
N.D.
N.D.
N.D.
stress
Paraquat dichloride 0.01 mg/ml
-0.8
-0.2
N.D.
N.D.
N.D.
nitrogen source
L-Threonine (N)
-0.9
+0.1
N.D.
N.D.
N.D.
stress
nitrite 10 mM
-0.8
+0.2
N.D.
N.D.
N.D.
stress
Cisplatin 0.0025 mg/ml
+1.2
-0.3
N.D.
N.D.
N.D.
phage
phage 93.2
+0.8
+0.2
N.D.
N.D.
N.D.
stress
copper (II) chloride 2 mM
+1.6
-0.5
N.D.
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
+3.2
+0.1
N.D.
N.D.
N.D.
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