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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4634 and Ac3H11_4635 are separated by 164 nucleotides
Ac3H11_4635 and Ac3H11_4636 are separated by 33 nucleotides
Ac3H11_4636 and Ac3H11_4637 are separated by 18 nucleotides
Ac3H11_4637 and Ac3H11_4638 are separated by 257 nucleotides
Ac3H11_4634 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 240,556 to 241,758
_4634
Ac3H11_4635 - transcriptional regulator, Crp/Fnr family, at 241,923 to 242,657
_4635
Ac3H11_4636 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 242,691 to 244,421
_4636
Ac3H11_4637 - hypothetical protein, at 244,440 to 244,583
_4637
Ac3H11_4638 - hypothetical protein, at 244,841 to 245,737
_4638
Group
Condition
Ac3H11
_4634
Ac3H11
_4635
Ac3H11
_4636
Ac3H11
_4637
Ac3H11
_4638
carbon source
Glycerol (C)
-0.6
-0.5
-0.3
-0.9
-0.5
temperature
LB 30C
-0.6
-0.8
-0.6
-0.3
-0.5
carbon source
D-Fructose (C)
-0.5
-0.7
-0.8
-0.2
-0.5
stress
nitrate 100 mM
-0.2
-0.9
-0.6
-0.4
-0.3
motility
inner cut, R2A soft agar motility assay
-0.8
-0.8
+0.3
-0.6
-0.1
motility
inner cut, R2A soft agar motility assay
-0.5
-0.3
-0.7
+0.3
-0.2
carbon source
succinate (C)
-0.2
-0.5
-0.5
+0.9
-0.1
nitrogen source
Ammonium chloride (N)
+0.0
+0.7
+0.8
-1.0
+0.0
lb
LB
-0.1
-0.2
-0.2
+1.4
+0.2
stress
Nickel (II) chloride 0.6 mM
+0.1
+0.1
-0.2
+1.3
+0.3
lb
LB
-0.2
+0.1
-0.0
+1.5
+0.3
stress
Cobalt chloride 0.4 mM
+0.5
+0.3
-0.0
+0.5
+0.6
lb
LB
+0.5
+0.3
+0.0
+0.7
+0.4
pH
LB, pH10
+0.2
+0.6
+0.5
+0.2
+0.5
stress
Sisomicin 0.001 mg/ml
+0.1
+0.3
+0.5
+0.8
+0.2
lb
LB
+0.3
+0.4
+0.3
+0.8
+0.2
pH
LB, pH8
+0.5
+0.5
+0.2
+0.4
+0.4
pH
LB, pH9
+0.4
+0.6
+0.7
+0.1
+0.3
nitrogen source
L-Arginine (N)
+0.7
+0.4
+0.5
+0.3
+0.2
stress
Thallium(I) acetate 0.0006 mg/ml
+0.4
+0.4
+0.4
+0.5
+0.4
pH
LB, pH5
+0.3
+0.5
+0.2
+0.8
+0.4
stress
Nickel (II) chloride 0.6 mM
+0.4
+0.2
+0.6
+0.6
+0.5
stress
2-Furfuraldehyde 0.06 vol%
+0.4
+0.4
+0.4
+0.6
+0.4
stress
Bacitracin 0.008 mg/ml
+0.4
+0.3
+0.5
+0.8
+0.4
pH
LB, pH9
+0.4
+0.5
+0.4
+0.8
+0.3
stress
Cobalt chloride 0.32 mM
+0.6
+0.4
+0.3
+0.8
+0.3
nitrogen source
L-Proline (N)
+0.5
+0.6
+0.5
+0.5
+0.4
stress
Phosphomycin 0.06 mg/ml
+0.3
+0.4
+0.3
+1.1
+0.4
stress
Nickel (II) chloride 0.8 mM
+0.4
+0.5
+0.6
+1.2
+0.2
nitrogen source
L-Alanine (N)
+0.6
+0.3
+0.9
+0.9
+0.2
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