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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_4622 and Ac3H11_4623 are separated by 36 nucleotides
Ac3H11_4623 and Ac3H11_4624 are separated by 283 nucleotides
Ac3H11_4624 and Ac3H11_4625 are separated by 349 nucleotides
Ac3H11_4625 and Ac3H11_4626 are separated by 228 nucleotides
Ac3H11_4622 - Steroid delta-isomerase domain protein, at 225,619 to 225,942
_4622
Ac3H11_4623 - Tricarboxylate transport protein TctC, at 225,979 to 227,097
_4623
Ac3H11_4624 - Tricarboxylate transport protein TctC, at 227,381 to 228,367
_4624
Ac3H11_4625 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 228,717 to 229,964
_4625
Ac3H11_4626 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 230,193 to 231,029
_4626
Group
Condition
Ac3H11
_4622
Ac3H11
_4623
Ac3H11
_4624
Ac3H11
_4625
Ac3H11
_4626
carbon source
D-Glucose (C)
-0.4
+0.2
+0.3
-4.4
+0.1
carbon source
D-Glucose (C)
-0.2
-0.1
+0.5
-4.7
+0.4
nitrogen source
L-Alanine (N)
-0.3
-3.0
+0.9
-0.9
-0.2
nitrogen source
L-Histidine (N)
+0.3
+0.2
+0.3
-3.9
+0.1
nitrogen source
Ammonium chloride (N)
-0.2
-0.2
+0.1
-2.8
+0.7
carbon source
D-Ribose (C)
-0.0
-0.4
-0.0
-1.8
-0.1
stress
Cisplatin 0.0025 mg/ml
+0.3
-1.2
-1.1
-0.4
+0.3
carbon source
D-Ribose (C)
-0.1
-0.1
+0.4
-2.0
-0.0
motility
inner cut, R2A soft agar motility assay
-0.4
-0.2
-1.0
-0.4
+0.2
carbon source
D-Gluconic Acid (C)
-0.2
-0.6
+0.1
-0.6
-0.2
nitrogen source
L-Arginine (N)
+0.0
+0.3
-0.0
-1.8
+0.1
carbon source
L-Arabinose (C)
-0.1
+0.1
+0.0
-1.1
-0.1
nitrogen source
L-Serine (N)
+0.1
+0.3
+0.2
-1.7
+0.0
nitrogen source
L-Threonine (N)
+0.2
+0.2
-0.1
-1.5
+0.2
phage
phage 93.1
-0.5
-0.6
+0.0
-0.1
+0.1
carbon source
L-Arabinose (C)
+0.1
+0.0
+0.1
-0.9
-0.1
carbon source
D-Sorbitol (C)
+0.2
+0.1
+0.0
-1.0
+0.1
stress
Cisplatin 0.005 mg/ml
+0.2
+0.1
-1.3
+0.4
+0.1
carbon source
pyruvate (C)
+0.0
-0.2
+0.9
-1.3
+0.2
nitrogen source
D-Alanine (N)
+0.2
-0.1
+0.5
-0.9
+0.0
carbon source
pyruvate (C)
+0.0
-0.1
+0.8
-1.3
+0.3
carbon source
D,L-Lactate (C)
-0.1
-0.4
+0.3
-0.3
+0.2
nitrogen source
L-Isoleucine (N)
+0.4
+0.3
+0.3
-0.8
-0.2
stress
nitrite 10 mM
+0.7
+0.0
-0.2
-0.2
-0.2
carbon source
L-Malic (C)
+0.2
-0.0
+0.6
-0.4
-0.1
phage
phage 93.2
+0.3
+0.2
+0.5
-0.4
-0.2
stress
Sisomicin 0.001 mg/ml
+0.5
-0.0
+0.2
-0.3
+0.3
stress
Nickel (II) chloride 0.8 mM
+0.5
-0.1
-0.2
+0.5
+0.0
pH
LB, pH10
-0.3
+0.3
+0.2
+0.6
+0.3
pH
LB, pH10
+0.1
+0.3
+0.8
+0.1
+0.0
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