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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4551 and Ac3H11_4552 are separated by 12 nucleotides
Ac3H11_4552 and Ac3H11_4553 are separated by 36 nucleotides
Ac3H11_4553 and Ac3H11_4554 are separated by 97 nucleotides
Ac3H11_4554 and Ac3H11_4555 are separated by 89 nucleotides
Ac3H11_4551 - Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1), at 143,264 to 144,070
_4551
Ac3H11_4552 - HD phosphohydrolase-like protein, at 144,083 to 144,667
_4552
Ac3H11_4553 - Transcriptional regulator, AsnC family, at 144,704 to 145,165
_4553
Ac3H11_4554 - Permease of the drug/metabolite transporter (DMT) superfamily, at 145,263 to 146,201
_4554
Ac3H11_4555 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 146,291 to 146,695
_4555
Group
Condition
Ac3H11
_4551
Ac3H11
_4552
Ac3H11
_4553
Ac3H11
_4554
Ac3H11
_4555
nitrogen source
Ammonium chloride (N)
-1.2
+0.3
-1.0
+0.0
N.D.
nitrogen source
L-Proline (N)
-0.3
-0.1
-0.8
+0.1
N.D.
nitrogen source
Uridine (N)
-0.2
+0.1
-0.9
+0.1
N.D.
nitrogen source
L-Alanine (N)
+0.2
+0.2
-0.7
-0.5
N.D.
stress
Cobalt chloride 0.16 mM
+0.1
-0.0
-0.7
-0.2
N.D.
lb
LB
+0.4
+0.1
-0.5
-0.3
N.D.
stress
Cisplatin 0.0025 mg/ml
-0.1
+0.5
-0.3
-0.4
N.D.
nitrogen source
L-tyrosine (N)
-0.3
-0.2
+0.4
-0.2
N.D.
nitrogen source
L-Isoleucine (N)
-0.2
+0.3
+0.1
-0.5
N.D.
carbon source
a-Ketoglutaric (C)
-0.4
+0.2
+0.2
-0.3
N.D.
stress
copper (II) chloride 1 mM
+0.3
+0.2
-0.4
-0.3
N.D.
carbon source
L-Lactate (C)
+0.3
-0.0
-0.6
+0.1
N.D.
nitrogen source
L-Histidine (N)
-0.0
+0.2
-0.7
+0.3
N.D.
carbon source
succinate (C)
+0.4
+0.1
-0.4
-0.2
N.D.
stress
Zinc 1 mM
+0.3
+0.2
-0.1
-0.5
N.D.
stress
Chlorite 0.1 mM
+0.6
+0.0
-0.3
-0.2
N.D.
phage
phage 93.2
-0.2
-0.1
+0.6
-0.2
N.D.
stress
Nickel (II) chloride 0.6 mM
+0.3
+0.1
+0.2
-0.5
N.D.
stress
Bacitracin 0.008 mg/ml
+0.2
+0.2
+0.4
-0.4
N.D.
lb
LB
+0.3
+0.2
-0.4
+0.4
N.D.
phage
phage 93.1
+0.1
-0.0
+0.7
-0.2
N.D.
motility
inner cut, R2A soft agar motility assay
+0.0
+0.2
+0.7
-0.4
N.D.
stress
nitrate 100 mM
+0.3
-0.2
+0.4
+0.2
N.D.
stress
Cephalothin 0.005 mg/ml
+0.3
-0.0
+0.8
-0.2
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.1
+0.2
+0.9
-0.4
N.D.
stress
Fusidic 0.001 mg/ml
+0.2
+0.2
+0.3
+0.2
N.D.
stress
perchlorate 10 mM
+0.6
+0.2
+0.3
-0.0
N.D.
motility
inner cut, R2A soft agar motility assay
+0.2
+0.4
+0.5
+0.1
N.D.
stress
Sisomicin 0.001 mg/ml
+0.7
-0.0
+0.5
+0.3
N.D.
stress
Bacitracin 0.032 mg/ml
+0.3
+0.6
+0.5
+0.4
N.D.
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