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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4548 and Ac3H11_4549 are separated by 210 nucleotides
Ac3H11_4549 and Ac3H11_4550 are separated by 45 nucleotides
Ac3H11_4550 and Ac3H11_4551 are separated by 34 nucleotides
Ac3H11_4551 and Ac3H11_4552 are separated by 12 nucleotides
Ac3H11_4548 - Metal-dependent hydrolase involved in phosphonate metabolism, at 140,011 to 141,165
_4548
Ac3H11_4549 - Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1), at 141,376 to 142,236
_4549
Ac3H11_4550 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 142,282 to 143,229
_4550
Ac3H11_4551 - Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1), at 143,264 to 144,070
_4551
Ac3H11_4552 - HD phosphohydrolase-like protein, at 144,083 to 144,667
_4552
Group
Condition
Ac3H11
_4548
Ac3H11
_4549
Ac3H11
_4550
Ac3H11
_4551
Ac3H11
_4552
stress
Paraquat dichloride 0.01 mg/ml
-0.0
-3.4
-0.1
+0.3
+0.4
nitrogen source
L-Alanine (N)
+0.5
-3.0
-0.4
+0.2
+0.2
pH
LB, pH10
+0.1
-1.6
+0.1
-0.3
+0.2
carbon source
pyruvate (C)
-0.1
-1.2
-0.1
-0.2
-0.0
stress
Ceftazidime 0.01 mg/ml
-0.2
-1.2
+0.1
-0.1
-0.2
stress
Cobalt chloride 0.32 mM
+0.0
-1.6
-0.2
+0.2
+0.0
carbon source
Glycerol (C)
-0.4
-1.0
+0.1
+0.3
-0.0
stress
Tetracycline 0.00005 mg/ml
+0.2
-1.1
-0.2
+0.1
+0.1
carbon source
L-Glutamine (C)
+0.1
-1.0
-0.1
+0.3
-0.1
stress
Cisplatin 0.0025 mg/ml
+0.1
-1.1
-0.2
-0.1
+0.5
stress
sodium fluoride 20 mM
+0.1
-0.9
+0.1
+0.2
+0.2
stress
Bacitracin 0.016 mg/ml
+0.0
-1.0
+0.1
+0.1
+0.5
stress
D-Cycloserine 0.05 mg/ml
-0.8
+0.6
-0.4
+0.1
+0.2
pH
LB, pH10
-0.0
-0.7
+1.1
+0.0
-0.2
carbon source
D-Gluconic Acid (C)
+0.1
+1.0
-0.6
-0.1
-0.2
nitrogen source
Ammonium chloride (N)
+0.5
+0.2
+0.4
-1.2
+0.3
nitrogen source
D-Alanine (N)
-0.2
+0.4
-0.5
+0.2
+0.4
lb
LB
-0.1
-0.5
+0.4
+0.4
+0.1
stress
nitrite 10 mM
-0.1
+1.0
+0.3
-0.3
-0.0
motility
inner cut, R2A soft agar motility assay
-0.1
+0.6
-0.2
+0.2
+0.4
lb
LB
-0.1
+1.0
-0.0
+0.2
-0.1
stress
copper (II) chloride 2 mM
-0.3
+0.3
+0.8
+0.1
+0.0
stress
Chlorite 0.1 mM
-0.1
+0.9
-0.4
+0.6
+0.0
stress
Cobalt chloride 0.32 mM
-0.2
+1.1
+0.2
+0.2
-0.1
stress
copper (II) chloride 1 mM
-0.1
+1.1
-0.2
+0.3
+0.2
nitrogen source
L-Isoleucine (N)
+0.0
+0.6
+0.7
-0.2
+0.3
carbon source
a-Ketoglutaric (C)
+0.2
+1.1
+0.2
+0.0
-0.0
stress
Bacitracin 0.032 mg/ml
+0.0
+0.8
+0.1
+0.3
+0.6
stress
Sisomicin 0.001 mg/ml
-0.1
+1.3
+0.0
+0.7
-0.0
stress
nitrate 45 mM
+0.1
+5.6
-0.2
-0.1
-0.1
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