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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4537 and Ac3H11_4538 overlap by 4 nucleotides
Ac3H11_4538 and Ac3H11_4539 overlap by 4 nucleotides
Ac3H11_4539 and Ac3H11_4540 are separated by 1 nucleotides
Ac3H11_4540 and Ac3H11_4541 are separated by 75 nucleotides
Ac3H11_4537 - Arsenate reductase (EC 1.20.4.1), at 132,264 to 132,686
_4537
Ac3H11_4538 - ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8), at 132,683 to 133,297
_4538
Ac3H11_4539 - Protein RcsF, at 133,294 to 134,007
_4539
Ac3H11_4540 - Transcriptional regulator PhnF, at 134,009 to 134,791
_4540
Ac3H11_4541 - PhnG protein, at 134,867 to 135,379
_4541
Group
Condition
Ac3H11
_4537
Ac3H11
_4538
Ac3H11
_4539
Ac3H11
_4540
Ac3H11
_4541
nitrogen source
L-Alanine (N)
N.D.
+0.1
-5.5
-0.3
-0.6
stress
copper (II) chloride 1 mM
N.D.
-0.8
-0.7
-0.6
-1.1
stress
D-Cycloserine 0.05 mg/ml
N.D.
-0.8
-1.0
-0.8
-0.6
stress
Cisplatin 0.005 mg/ml
N.D.
+0.1
-3.5
-0.0
+0.4
nitrogen source
D-Alanine (N)
N.D.
-1.0
+0.5
-0.5
-2.0
carbon source
L-Arabinose (C)
N.D.
-0.3
-1.2
-0.3
-0.9
carbon source
a-Ketoglutaric (C)
N.D.
+0.3
-0.9
-0.5
-1.5
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
+0.3
-2.7
+0.1
-0.1
motility
inner cut, R2A soft agar motility assay
N.D.
+0.4
-2.2
+0.2
-0.5
nitrogen source
L-Histidine (N)
N.D.
-0.6
-1.1
+0.1
-0.5
carbon source
D-Gluconic Acid (C)
N.D.
+0.0
-1.5
+0.1
-0.5
carbon source
pyruvate (C)
N.D.
+0.4
-1.3
-0.2
-0.6
stress
sodium fluoride 25 mM
N.D.
-0.4
-0.8
+0.4
-0.8
carbon source
D-Ribose (C)
N.D.
-0.4
-1.5
+0.2
+0.2
carbon source
pyruvate (C)
N.D.
+0.4
-1.2
-0.1
-0.4
carbon source
propionate (C)
N.D.
+0.6
-1.1
-0.3
-0.3
stress
Cobalt chloride 0.32 mM
N.D.
+0.5
+0.4
-0.7
-0.8
nitrogen source
Ammonium chloride (N)
N.D.
-0.0
-1.2
+1.0
-0.2
phage
phage 93.2
N.D.
+0.3
+0.5
+0.4
-1.4
stress
Phosphomycin 0.02 mg/ml
N.D.
+0.6
+0.8
-0.4
-0.7
pH
LB, pH10
N.D.
+0.4
-1.3
+0.0
+1.3
stress
nitrite 10 mM
N.D.
+0.3
+1.0
-0.3
-0.5
stress
Phosphomycin 0.06 mg/ml
N.D.
+0.1
+1.2
+0.3
-0.9
stress
Chlorite 0.1 mM
N.D.
-0.8
+1.1
+0.3
+0.2
motility
inner cut, R2A soft agar motility assay
N.D.
-0.7
+0.5
+0.3
+1.0
stress
Cobalt chloride 0.32 mM
N.D.
-0.2
+1.3
-0.3
+0.5
lb
LB
N.D.
-0.5
+1.4
-0.2
+0.6
stress
sodium fluoride 35 mM
N.D.
-0.3
+0.6
+0.1
+1.5
stress
perchlorate 10 mM
N.D.
-0.1
+1.2
-0.1
+0.9
carbon source
D-Ribose (C)
N.D.
+0.4
-0.4
+0.2
+2.3
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