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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4490 and Ac3H11_4491 are separated by 21 nucleotides
Ac3H11_4491 and Ac3H11_4492 are separated by 46 nucleotides
Ac3H11_4492 and Ac3H11_4493 are separated by 23 nucleotides
Ac3H11_4493 and Ac3H11_4494 are separated by 20 nucleotides
Ac3H11_4490 - Nitrate/nitrite transporter, at 78,996 to 80,288
_4490
Ac3H11_4491 - Nitrate/nitrite transporter, at 80,310 to 81,719
_4491
Ac3H11_4492 - Respiratory nitrate reductase alpha chain (EC 1.7.99.4), at 81,766 to 85,566
_4492
Ac3H11_4493 - Respiratory nitrate reductase beta chain (EC 1.7.99.4), at 85,590 to 87,113
_4493
Ac3H11_4494 - Respiratory nitrate reductase delta chain (EC 1.7.99.4), at 87,134 to 87,835
_4494
Group
Condition
Ac3H11
_4490
Ac3H11
_4491
Ac3H11
_4492
Ac3H11
_4493
Ac3H11
_4494
lb
LB
-0.1
-0.5
-0.1
+0.1
-0.6
nitrogen source
Ammonium chloride (N)
+0.3
-1.3
-0.0
-0.1
-0.1
stress
Thallium(I) acetate 0.0006 mg/ml
-0.1
-0.2
-0.1
-0.2
-0.4
stress
Cephalothin 0.025 mg/ml
-0.1
-0.2
-0.1
-0.0
-0.5
stress
sodium fluoride 35 mM
-0.2
-0.5
-0.0
+0.1
-0.2
carbon source
a-Ketoglutaric (C)
+0.3
-0.6
-0.1
+0.1
-0.5
lb
LB
-0.0
+0.1
-0.1
+0.1
-0.7
stress
Sisomicin 0.001 mg/ml
+0.1
-0.3
-0.0
+0.2
-0.3
stress
Cobalt chloride 0.4 mM
-0.0
-0.5
-0.0
+0.1
+0.3
nitrogen source
L-Isoleucine (N)
-0.3
-0.2
+0.1
+0.1
+0.3
pH
LB, pH10
+0.0
+0.6
-0.0
+0.0
-0.4
stress
Doxycycline hyclate 0.000025 mg/ml
-0.1
-0.1
-0.0
-0.1
+0.6
stress
Fusidic 0.001 mg/ml
+0.0
-0.2
-0.0
-0.1
+0.6
motility
inner cut, R2A soft agar motility assay
+0.1
-0.5
+0.1
+0.2
+0.5
nitrogen source
L-Alanine (N)
-0.0
-0.2
+0.2
+0.4
+0.1
stress
perchlorate 25 mM
-0.2
+0.0
+0.2
+0.3
+0.3
stress
Zinc 1 mM
-0.0
-0.1
-0.0
+0.1
+0.7
stress
copper (II) chloride 2 mM
+0.1
+0.8
-0.1
+0.0
-0.1
stress
Bacitracin 0.016 mg/ml
-0.1
+0.0
+0.0
+0.1
+0.6
phage
phage 93.2
+0.0
-0.1
+0.1
-0.1
+0.9
stress
Cisplatin 0.0025 mg/ml
+0.0
+0.2
+0.1
+0.0
+0.5
motility
inner cut, R2A soft agar motility assay
+0.2
+0.9
+0.2
+0.0
-0.5
stress
Sisomicin 0.0005 mg/ml
+0.1
+0.4
+0.1
+0.0
+0.4
lb
LB
+0.1
+0.5
+0.1
+0.2
+0.2
stress
Bacitracin 0.032 mg/ml
+0.0
+0.5
+0.2
+0.3
+0.1
stress
perchlorate 10 mM
-0.1
+0.2
+0.3
+0.6
+0.1
stress
copper (II) chloride 1 mM
+0.3
+0.5
+0.1
+0.1
+0.4
stress
Chlorite 0.1 mM
+0.2
+0.3
+0.2
+0.3
+0.5
motility
inner cut, R2A soft agar motility assay
+0.1
+0.7
+0.1
-0.0
+0.6
stress
Chlorate 20 mM
+0.3
-0.2
+3.5
+3.6
+3.4
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