Fitness for 5 genes in Acidovorax sp. GW101-3H11

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500 ntAc3H11_4485 and Ac3H11_4486 are separated by 112 nucleotidesAc3H11_4486 and Ac3H11_4487 are separated by 15 nucleotidesAc3H11_4487 and Ac3H11_4488 are separated by 72 nucleotidesAc3H11_4488 and Ac3H11_4489 are separated by 85 nucleotides Ac3H11_4485 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 71,625 to 72,476 _4485 Ac3H11_4486 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 72,589 to 74,889 _4486 Ac3H11_4487 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 74,905 to 75,825 _4487 Ac3H11_4488 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 75,898 to 77,877 _4488 Ac3H11_4489 - Nitrate/nitrite response regulator protein, at 77,963 to 78,664 _4489
Group Condition Ac3H11_4485 Ac3H11_4486 Ac3H11_4487 Ac3H11_4488 Ac3H11_4489
carbon source succinate (C) N.D. +0.1 -1.2 -0.0 N.D.
stress Ceftazidime 0.01 mg/ml N.D. -0.1 -0.7 -0.3 N.D.
carbon source succinate (C) N.D. -0.1 -0.8 -0.1 N.D.
pH LB, pH10 N.D. -0.2 -0.6 -0.1 N.D.
stress Polymyxin B sulfate 0.0001 mg/ml N.D. -0.3 -0.6 -0.0 N.D.
carbon source D-Fructose (C) N.D. +0.1 -0.9 -0.0 N.D.
temperature LB 30C N.D. +0.0 -0.7 -0.1 N.D.
carbon source pyruvate (C) N.D. +0.1 -0.7 -0.1 N.D.
temperature LB 23C N.D. -0.2 -0.5 -0.1 N.D.
carbon source D-Lactate (C) N.D. -0.1 -0.4 -0.2 N.D.
phage phage 93.1 N.D. -0.3 -0.5 +0.2 N.D.
stress Phosphomycin 0.06 mg/ml N.D. -0.2 -0.4 +0.1 N.D.
carbon source L-Lactate (C) N.D. +0.2 -0.7 +0.0 N.D.
nitrogen source Ammonium chloride (N) N.D. +0.3 -0.1 -0.5 N.D.
stress Cisplatin 0.005 mg/ml N.D. -0.5 +0.7 -0.4 N.D.
stress Chlorite 0.1 mM N.D. -0.2 -0.2 +0.3 N.D.
carbon source a-Ketoglutaric (C) N.D. +0.3 -0.2 -0.2 N.D.
stress Cisplatin 0.0025 mg/ml N.D. -0.1 +0.6 -0.3 N.D.
phage phage 93.1 N.D. -0.2 +0.9 -0.1 N.D.
pH LB, pH10 N.D. +0.1 +0.9 -0.4 N.D.
nitrogen source L-Isoleucine (N) N.D. +0.1 +0.6 -0.0 N.D.
lb LB N.D. -0.0 +0.8 -0.1 N.D.
lb LB N.D. +0.2 +0.4 +0.2 N.D.
stress copper (II) chloride 2 mM N.D. +0.0 +1.0 -0.3 N.D.
carbon source succinate (C) N.D. -0.2 +1.2 -0.1 N.D.
stress Zinc 1 mM N.D. +0.0 +0.6 +0.3 N.D.
motility inner cut, R2A soft agar motility assay N.D. +0.2 +0.6 +0.0 N.D.
stress Chlorate 20 mM N.D. -0.2 -1.2 +2.2 N.D.
nitrogen source D-Alanine (N) N.D. +0.3 +0.4 +0.2 N.D.
stress Paraquat dichloride 0.01 mg/ml N.D. -0.1 +0.9 +0.3 N.D.
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