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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_446 and Ac3H11_447 overlap by 39 nucleotides
Ac3H11_447 and Ac3H11_448 overlap by 28 nucleotides
Ac3H11_448 and Ac3H11_449 are separated by 398 nucleotides
Ac3H11_449 and Ac3H11_450 overlap by 1 nucleotides
Ac3H11_446 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 133,320 to 135,545
_446
Ac3H11_447 - hypothetical protein, at 135,507 to 135,725
_447
Ac3H11_448 - Sensory box/GGDEF family protein, at 135,698 to 138,649
_448
Ac3H11_449 - Putative hemolysin, at 139,048 to 139,689
_449
Ac3H11_450 - Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.54) homolog, at 139,689 to 140,561
_450
Group
Condition
Ac3H11
_446
Ac3H11
_447
Ac3H11
_448
Ac3H11
_449
Ac3H11
_450
stress
D-Cycloserine 0.05 mg/ml
-0.5
-0.4
+0.1
-0.5
+0.3
stress
copper (II) chloride 1 mM
+0.6
+0.4
-0.1
-0.1
+0.1
stress
Nickel (II) chloride 0.6 mM
+0.3
+0.2
+0.0
-0.3
+0.7
stress
perchlorate 25 mM
-0.1
+0.3
+0.1
-0.1
+0.8
stress
Chlorite 0.1 mM
+0.4
+0.2
-0.0
-0.3
+1.0
stress
Cisplatin 0.0025 mg/ml
+0.0
+0.5
+0.2
+0.1
+0.4
stress
A22 0.025 mg/ml
+0.5
+0.2
+0.1
+0.0
+0.5
stress
copper (II) chloride 1 mM
+0.1
+0.1
+0.2
+0.4
+0.5
stress
Paraquat dichloride 0.01 mg/ml
+0.2
-0.0
+0.2
-0.2
+1.1
stress
Sisomicin 0.001 mg/ml
+0.2
+0.1
+0.3
-0.1
+0.9
stress
Bacitracin 0.032 mg/ml
+0.2
+0.1
+0.1
+0.2
+0.7
stress
Phosphomycin 0.06 mg/ml
+0.3
+0.1
+0.1
+0.1
+0.8
phage
phage 93.2
+0.6
+0.5
+0.1
-0.0
+0.2
stress
Bacitracin 0.008 mg/ml
+0.4
+0.2
+0.1
-0.1
+0.7
stress
Phosphomycin 0.02 mg/ml
+0.3
+0.3
+0.1
+0.2
+0.5
phage
phage 93.1
+0.3
+0.6
+0.0
+0.4
+0.1
nitrogen source
Ammonium chloride (N)
-0.3
+0.0
+0.4
+0.7
+0.7
stress
perchlorate 10 mM
+0.2
+0.1
+0.2
+0.1
+0.9
lb
LB
+0.4
+0.2
+0.0
+0.4
+0.6
stress
Cobalt chloride 0.32 mM
+0.9
+0.5
-0.1
-0.0
+0.4
stress
Cisplatin 0.005 mg/ml
+0.4
-0.1
-0.0
+0.6
+0.9
lb
LB
+0.4
+0.3
+0.2
+0.2
+0.8
lb
LB
+0.2
+0.3
+0.1
+0.7
+0.7
stress
Nickel (II) chloride 0.6 mM
+1.4
+0.6
-0.1
+0.1
+0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
+1.4
+0.6
+0.0
-0.0
+0.2
stress
Sisomicin 0.0005 mg/ml
+1.3
+0.6
-0.0
+0.5
+0.2
lb
LB
+1.5
+0.7
-0.0
+0.2
+0.2
lb
LB
+1.8
+1.1
-0.2
-0.0
+0.2
stress
Cobalt chloride 0.32 mM
+2.0
+1.2
-0.2
+0.3
+0.1
stress
Cobalt chloride 0.16 mM
+2.5
+1.7
-0.2
-0.1
+0.2
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