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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4444 and Ac3H11_4445 overlap by 8 nucleotides
Ac3H11_4445 and Ac3H11_4446 are separated by 212 nucleotides
Ac3H11_4446 and Ac3H11_4447 are separated by 161 nucleotides
Ac3H11_4447 and Ac3H11_4448 overlap by 17 nucleotides
Ac3H11_4444 - Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase, at 19,166 to 20,188
_4444
Ac3H11_4445 - FIG00931152: hypothetical protein, at 20,181 to 20,732
_4445
Ac3H11_4446 - Cytochrome c5, at 20,945 to 21,493
_4446
Ac3H11_4447 - RND efflux system, outer membrane lipoprotein CmeC, at 21,655 to 23,079
_4447
Ac3H11_4448 - RND efflux system, inner membrane transporter CmeB, at 23,063 to 26,218
_4448
Group
Condition
Ac3H11
_4444
Ac3H11
_4445
Ac3H11
_4446
Ac3H11
_4447
Ac3H11
_4448
stress
Tetracycline 0.0001 mg/ml
-0.0
-0.1
-0.1
-3.1
-2.4
stress
Chloramphenicol 0.001 mg/ml
-0.0
-0.0
-0.2
-3.1
-2.3
stress
Tetracycline 0.00005 mg/ml
-0.0
-0.1
-0.2
-2.6
-2.5
stress
Fusidic 0.001 mg/ml
+0.2
+0.1
-0.1
-3.0
-2.2
stress
Bacitracin 0.032 mg/ml
+0.2
-0.0
-0.1
-2.2
-2.6
stress
Chloramphenicol 0.0005 mg/ml
+0.1
-0.1
-0.0
-2.1
-2.0
nitrogen source
Ammonium chloride (N)
+0.4
+0.2
-0.6
-2.4
-1.5
stress
copper (II) chloride 1 mM
+0.3
+0.2
-0.2
-2.3
-1.7
stress
Aluminum chloride 4 mM
+0.1
+0.1
-0.3
-1.9
-1.5
stress
Zinc 1 mM
-0.0
+0.1
+0.2
-1.9
-1.5
carbon source
Tween 20 (C)
-0.0
-0.1
-0.2
-0.7
-1.6
stress
Dimethyl Sulfoxide 6 vol%
-0.0
+0.1
+0.1
-1.1
-1.7
lb
LB
+0.0
-0.2
-0.4
-0.6
-1.3
stress
sodium fluoride 50 mM
-0.2
-0.0
+0.0
-1.0
-1.3
carbon source
D-Gluconic Acid (C)
+0.0
+0.0
-1.5
+0.1
-1.0
stress
Aluminum chloride 2 mM
+0.2
+0.0
-0.1
-1.0
-1.4
carbon source
pyruvate (C)
+0.2
-0.2
-1.5
-0.1
-0.7
stress
Doxycycline hyclate 0.000025 mg/ml
+0.1
-0.2
+0.0
-1.3
-0.9
stress
copper (II) chloride 2 mM
+0.2
+0.3
-0.3
-1.6
-0.7
stress
Bacitracin 0.008 mg/ml
+0.2
+0.1
-0.3
-0.6
-1.5
pH
LB, pH10
-0.2
-0.1
+0.5
-1.4
-0.7
stress
Sisomicin 0.004 mg/ml
-0.1
-0.1
+0.2
-0.7
-1.2
stress
Bacitracin 0.016 mg/ml
+0.0
-0.2
+0.3
-0.4
-1.5
carbon source
D-Gluconic Acid (C)
+0.1
+0.0
-1.7
+0.1
-0.3
motility
inner cut, R2A soft agar motility assay
+0.3
-0.3
-0.6
-0.1
-0.9
stress
perchlorate 25 mM
+0.2
+0.0
+0.3
-1.1
-0.8
stress
nitrate 100 mM
+0.0
+0.2
+0.4
-1.0
-1.1
carbon source
a-Ketoglutaric (C)
-0.1
-0.3
-0.8
+0.8
+0.2
stress
syringaldehyde 2.5 mM
+0.1
-0.2
-0.1
+0.7
+1.3
nitrogen source
L-tyrosine (N)
-0.0
+0.0
+0.3
+0.8
+1.1
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