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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_4427 and Ac3H11_4428 overlap by 4 nucleotides
Ac3H11_4428 and Ac3H11_4429 are separated by 94 nucleotides
Ac3H11_4429 and Ac3H11_4430 are separated by 213 nucleotides
Ac3H11_4430 and Ac3H11_4431 are separated by 19 nucleotides
Ac3H11_4427 - Probable transmembrane protein, at 4,120 to 5,073
_4427
Ac3H11_4428 - Molybdopterin-binding protein, at 5,070 to 5,891
_4428
Ac3H11_4429 - Glutamine synthetase type I (EC 6.3.1.2), at 5,986 to 7,479
_4429
Ac3H11_4430 - FIG01198927: hypothetical protein, at 7,693 to 8,205
_4430
Ac3H11_4431 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 8,225 to 9,313
_4431
Group
Condition
Ac3H11
_4427
Ac3H11
_4428
Ac3H11
_4429
Ac3H11
_4430
Ac3H11
_4431
nitrogen source
L-Leucine (N)
-0.0
+0.5
N.D.
-0.6
-4.0
nitrogen source
Uridine (N)
+0.3
+0.2
N.D.
-0.2
-3.4
nitrogen source
L-Isoleucine (N)
+0.2
-0.0
N.D.
-0.6
-2.7
nitrogen source
L-Threonine (N)
-0.1
+0.3
N.D.
-0.2
-2.5
nitrogen source
L-tyrosine (N)
+0.3
+0.0
N.D.
+0.1
-2.4
nitrogen source
L-Phenylalanine (N)
+0.2
+0.1
N.D.
-0.3
-1.7
nitrogen source
L-Proline (N)
+0.2
+0.1
N.D.
-0.3
-1.3
nitrogen source
L-Serine (N)
+0.2
+0.3
N.D.
-0.1
-1.5
nitrogen source
L-Arginine (N)
+0.2
+0.2
N.D.
+0.7
-1.7
carbon source
D,L-Lactate (C)
+0.7
+0.6
N.D.
-0.2
-0.7
motility
inner cut, R2A soft agar motility assay
+0.4
+0.5
N.D.
-0.4
+1.0
stress
Cisplatin 0.005 mg/ml
+0.4
+0.3
N.D.
+1.1
-0.3
stress
Sisomicin 0.0005 mg/ml
-0.3
+0.2
N.D.
+1.4
+0.4
carbon source
L-Arabinose (C)
+0.7
+0.5
N.D.
+0.6
-0.1
stress
perchlorate 25 mM
+0.5
+0.5
N.D.
+0.6
+0.3
stress
nitrite 10 mM
+0.6
+0.5
N.D.
+0.7
+0.1
carbon source
pyruvate (C)
+0.9
+0.4
N.D.
+0.1
+0.5
stress
copper (II) chloride 2 mM
+0.1
+0.2
N.D.
+1.1
+0.6
phage
phage 93.1
+0.6
+0.4
N.D.
+0.7
+0.4
carbon source
L-Malic (C)
+1.0
+0.5
N.D.
+0.9
-0.3
carbon source
Glycerol (C)
+0.5
+0.6
N.D.
+0.4
+0.7
pH
LB, pH9
+0.3
+0.3
N.D.
+1.5
+0.2
carbon source
casaminos (C)
+0.6
+0.6
N.D.
+0.5
+0.6
carbon source
D-Gluconic Acid (C)
+0.7
+0.4
N.D.
-0.1
+1.4
carbon source
a-Ketoglutaric (C)
+0.6
+0.3
N.D.
+0.6
+0.9
temperature
LB 30C
+0.7
+0.5
N.D.
+0.5
+0.9
carbon source
D-Gluconic Acid (C)
+0.8
+0.5
N.D.
+0.6
+1.1
carbon source
a-Ketoglutaric (C)
+1.0
+0.5
N.D.
+0.9
+0.8
pH
LB, pH10
+0.4
+0.2
N.D.
+2.4
+0.5
pH
LB, pH10
+0.6
-0.0
N.D.
+2.7
+0.8
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