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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4408 and Ac3H11_4409 are separated by 35 nucleotides
Ac3H11_4409 and Ac3H11_4410 are separated by 244 nucleotides
Ac3H11_4410 and Ac3H11_4411 are separated by 84 nucleotides
Ac3H11_4411 and Ac3H11_4412 are separated by 64 nucleotides
Ac3H11_4408 - putative lipoprotein transmembrane, at 203,786 to 204,265
_4408
Ac3H11_4409 - Peptide deformylase (EC 3.5.1.88), at 204,301 to 204,744
_4409
Ac3H11_4410 - Uncharacterized protein with LysM domain, COG1652, at 204,989 to 206,221
_4410
Ac3H11_4411 - Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake, at 206,306 to 207,484
_4411
Ac3H11_4412 - Thymidine phosphorylase (EC 2.4.2.4), at 207,549 to 209,903
_4412
Group
Condition
Ac3H11
_4408
Ac3H11
_4409
Ac3H11
_4410
Ac3H11
_4411
Ac3H11
_4412
pH
LB, pH10
-1.6
N.D.
+0.2
-0.0
+0.2
nitrogen source
L-Leucine (N)
-0.0
N.D.
-0.5
-0.2
-0.1
stress
5-Hydroxymethylfurfural 5 mM
-0.6
N.D.
-0.1
-0.1
+0.1
nitrogen source
Uridine (N)
-0.2
N.D.
-0.5
+0.0
+0.1
nitrogen source
Ammonium chloride (N)
-0.3
N.D.
-0.1
-0.3
+0.2
stress
Bacitracin 0.008 mg/ml
-0.5
N.D.
+0.1
-0.2
+0.1
carbon source
Tween 20 (C)
+0.2
N.D.
-0.5
+0.0
+0.1
stress
nitrite 10 mM
-0.3
N.D.
+0.1
+0.2
-0.1
nitrogen source
D-Alanine (N)
-0.1
N.D.
-0.2
+0.6
-0.2
stress
Phosphomycin 0.06 mg/ml
-0.4
N.D.
+0.2
+0.1
+0.2
pH
LB, pH10
+0.4
N.D.
+0.1
-0.2
+0.1
carbon source
D-Gluconic Acid (C)
+0.4
N.D.
+0.2
-0.1
-0.0
stress
Zinc 1 mM
+0.3
N.D.
+0.1
-0.1
+0.2
carbon source
D-Glucose (C)
+0.4
N.D.
-0.1
+0.1
+0.2
carbon source
D-Ribose (C)
+0.3
N.D.
-0.0
+0.2
+0.2
stress
Nickel (II) chloride 0.6 mM
-0.1
N.D.
+0.3
+0.0
+0.5
lb
LB
+0.4
N.D.
+0.2
-0.1
+0.2
stress
Sisomicin 0.0005 mg/ml
+0.0
N.D.
+0.5
-0.1
+0.3
stress
perchlorate 25 mM
+0.0
N.D.
+0.3
+0.3
+0.1
stress
Chlorite 0.1 mM
+0.4
N.D.
+0.1
+0.2
+0.0
stress
Paraquat dichloride 0.01 mg/ml
+0.2
N.D.
+0.2
+0.2
+0.2
lb
LB
+0.0
N.D.
+0.5
-0.0
+0.3
temperature
LB 30C
+0.4
N.D.
+0.2
+0.2
+0.2
motility
inner cut, R2A soft agar motility assay
+0.5
N.D.
+0.0
+0.1
+0.2
stress
Cobalt chloride 0.16 mM
+0.2
N.D.
+0.3
+0.2
+0.3
stress
Sisomicin 0.001 mg/ml
+0.3
N.D.
+0.2
+0.4
+0.2
stress
Cisplatin 0.0025 mg/ml
+0.6
N.D.
+0.1
+0.3
+0.1
lb
LB
+0.3
N.D.
+0.5
+0.1
+0.3
stress
Bacitracin 0.016 mg/ml
+0.7
N.D.
+0.3
+0.2
+0.2
motility
inner cut, R2A soft agar motility assay
+0.7
N.D.
+0.1
+0.5
+0.2
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