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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4403 and Ac3H11_4404 are separated by 263 nucleotides
Ac3H11_4404 and Ac3H11_4405 are separated by 178 nucleotides
Ac3H11_4405 and Ac3H11_4406 overlap by 4 nucleotides
Ac3H11_4406 and Ac3H11_4407 overlap by 4 nucleotides
Ac3H11_4403 - hypothetical protein, at 199,337 to 199,966
_4403
Ac3H11_4404 - Phosphoglycerate kinase (EC 2.7.2.3), at 200,230 to 201,429
_4404
Ac3H11_4405 - Probable transmembrane protein, at 201,608 to 201,946
_4405
Ac3H11_4406 - Branched-chain amino acid transport protein AzlC, at 201,943 to 202,767
_4406
Ac3H11_4407 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 202,764 to 203,738
_4407
Group
Condition
Ac3H11
_4403
Ac3H11
_4404
Ac3H11
_4405
Ac3H11
_4406
Ac3H11
_4407
nitrogen source
Ammonium chloride (N)
+0.1
N.D.
-1.1
-0.4
N.D.
nitrogen source
Uridine (N)
-0.1
N.D.
-0.6
-0.6
N.D.
carbon source
D-Galactose (C)
-0.0
N.D.
-0.6
-0.6
N.D.
nitrogen source
L-Alanine (N)
-0.0
N.D.
-0.9
-0.1
N.D.
nitrogen source
L-Arginine (N)
-0.1
N.D.
-0.5
-0.5
N.D.
nitrogen source
L-Histidine (N)
+0.0
N.D.
-0.4
-0.6
N.D.
stress
Cisplatin 0.0025 mg/ml
-0.1
N.D.
-0.6
-0.1
N.D.
nitrogen source
L-tyrosine (N)
+0.1
N.D.
-0.6
-0.4
N.D.
nitrogen source
L-Proline (N)
+0.0
N.D.
-0.4
-0.3
N.D.
lb
LB
-0.0
N.D.
-0.3
-0.4
N.D.
carbon source
D-Galactose (C)
+0.1
N.D.
-0.5
-0.2
N.D.
stress
Cisplatin 0.005 mg/ml
+0.1
N.D.
-0.2
-0.3
N.D.
stress
Phosphomycin 0.02 mg/ml
+0.3
N.D.
-0.4
-0.2
N.D.
carbon source
L-Arabinose (C)
+0.1
N.D.
-0.3
-0.2
N.D.
carbon source
D-Galactose (C)
+0.2
N.D.
-0.4
-0.2
N.D.
stress
Paraquat dichloride 0.01 mg/ml
+0.2
N.D.
-0.5
-0.1
N.D.
stress
Bacitracin 0.032 mg/ml
+0.2
N.D.
-0.1
-0.5
N.D.
carbon source
Tween 20 (C)
+0.2
N.D.
-0.2
-0.3
N.D.
stress
Bacitracin 0.016 mg/ml
+0.4
N.D.
-0.4
-0.3
N.D.
stress
copper (II) chloride 1 mM
+0.3
N.D.
-0.2
-0.3
N.D.
motility
inner cut, R2A soft agar motility assay
-0.2
N.D.
+0.2
+0.3
N.D.
lb
LB
+0.4
N.D.
-0.2
+0.1
N.D.
carbon source
a-Ketoglutaric (C)
+0.2
N.D.
-0.1
+0.4
N.D.
pH
LB, pH10
+0.2
N.D.
+0.3
+0.2
N.D.
stress
copper (II) chloride 2 mM
+0.1
N.D.
+0.4
+0.4
N.D.
motility
inner cut, R2A soft agar motility assay
+0.3
N.D.
+0.4
+0.1
N.D.
phage
phage 93.2
+0.0
N.D.
+0.4
+0.8
N.D.
phage
phage 93.1
+0.2
N.D.
+0.7
+0.8
N.D.
phage
phage 93.1
+0.2
N.D.
+0.9
+0.8
N.D.
stress
D-Cycloserine 0.05 mg/ml
-0.4
N.D.
+2.6
+3.0
N.D.
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