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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4397 and Ac3H11_4398 are separated by 115 nucleotides
Ac3H11_4398 and Ac3H11_4399 overlap by 4 nucleotides
Ac3H11_4399 and Ac3H11_4400 are separated by 146 nucleotides
Ac3H11_4400 and Ac3H11_4401 are separated by 50 nucleotides
Ac3H11_4397 - thioesterase superfamily, at 194,146 to 194,586
_4397
Ac3H11_4398 - ortholog of Bordetella pertussis (BX470248) BP3300, at 194,702 to 195,712
_4398
Ac3H11_4399 - Tricarboxylate transport protein TctC, at 195,709 to 196,686
_4399
Ac3H11_4400 - putative LysR-family transcriptional regulator, at 196,833 to 197,729
_4400
Ac3H11_4401 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 197,780 to 198,607
_4401
Group
Condition
Ac3H11
_4397
Ac3H11
_4398
Ac3H11
_4399
Ac3H11
_4400
Ac3H11
_4401
carbon source
D-Glucose (C)
-0.2
+0.1
-0.0
-0.1
-7.3
carbon source
L-Lactate (C)
-0.1
+0.0
+0.0
+0.0
-7.5
carbon source
L-Arabinose (C)
-0.1
-0.2
+0.1
+0.1
-7.3
carbon source
D-Ribose (C)
-0.2
-0.0
+0.0
+0.1
-7.2
carbon source
D-Lactate (C)
-0.6
+0.2
+0.1
+0.1
-6.9
carbon source
D-Glucose (C)
-0.0
+0.1
-0.0
+0.0
-7.2
carbon source
propionate (C)
-0.1
+0.1
-0.0
+0.0
-6.9
carbon source
D-Fructose (C)
+0.0
+0.3
+0.1
-0.2
-7.0
carbon source
D,L-Lactate (C)
+0.0
+0.0
-0.3
+0.1
-6.6
carbon source
pyruvate (C)
-0.1
-0.2
-0.0
+0.1
-6.5
carbon source
succinate (C)
-0.3
-0.2
-0.0
-0.1
-6.0
carbon source
L-Lactate (C)
+0.0
+0.1
-0.1
-0.0
-6.4
stress
Cisplatin 0.005 mg/ml
-0.7
-0.5
-0.2
-0.2
-4.9
carbon source
D-Gluconic Acid (C)
-0.3
+0.1
-0.1
+0.2
-6.2
carbon source
D-Gluconic Acid (C)
-0.2
+0.2
+0.2
+0.2
-6.6
carbon source
D-Fructose (C)
-0.3
-0.0
+0.3
+0.2
-6.4
carbon source
D-Lactate (C)
+0.2
+0.2
-0.2
-0.0
-6.4
carbon source
D-Ribose (C)
-0.1
-0.1
+0.0
+0.3
-6.3
carbon source
L-Arabinose (C)
-0.2
+0.1
+0.0
+0.0
-6.0
carbon source
pyruvate (C)
+0.0
+0.3
-0.0
+0.1
-6.4
carbon source
D-Galactose (C)
+0.2
+0.1
+0.1
+0.1
-6.5
nitrogen source
L-Proline (N)
-0.1
+0.3
-0.0
+0.1
-5.9
carbon source
D-Galactose (C)
-0.1
+0.2
+0.6
+0.2
-6.4
nitrogen source
L-Glutamine (N)
+0.3
-0.0
+0.1
-0.0
-5.8
carbon source
Tween 20 (C)
+0.3
-0.1
-0.2
+0.3
-5.7
nitrogen source
L-Phenylalanine (N)
+0.2
+0.2
-0.1
+0.3
-5.9
motility
inner cut, R2A soft agar motility assay
+0.8
-0.6
-0.0
+0.2
-5.5
carbon source
L-Asparagine (C)
+0.3
+0.0
-0.0
+0.3
-5.8
nitrogen source
L-Alanine (N)
+0.0
+0.5
-0.4
-0.0
-5.3
nitrogen source
L-Threonine (N)
-0.1
+1.0
+0.3
+0.1
-5.1
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