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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4390 and Ac3H11_4391 are separated by 42 nucleotides
Ac3H11_4391 and Ac3H11_4392 overlap by 48 nucleotides
Ac3H11_4392 and Ac3H11_4393 are separated by 192 nucleotides
Ac3H11_4393 and Ac3H11_4394 are separated by 172 nucleotides
Ac3H11_4390 - integral membrane sensor signal transduction histidine kinase, at 185,885 to 187,267
_4390
Ac3H11_4391 - Transcriptional activator of acetoin/glycerol metabolism, at 187,310 to 189,256
_4391
Ac3H11_4392 - hypothetical protein, at 189,209 to 189,382
_4392
Ac3H11_4393 - Aldehyde dehydrogenase (EC 1.2.1.3), at 189,575 to 191,098
_4393
Ac3H11_4394 - FIG01210906: hypothetical protein, at 191,271 to 191,648
_4394
Group
Condition
Ac3H11
_4390
Ac3H11
_4391
Ac3H11
_4392
Ac3H11
_4393
Ac3H11
_4394
carbon source
D-Glucose (C)
-0.1
-1.5
N.D.
-1.7
+0.0
carbon source
D-Glucose (C)
+0.1
-1.4
N.D.
-1.8
+0.1
carbon source
L-Arabinose (C)
-0.1
-0.6
N.D.
-0.9
+0.1
carbon source
D-Ribose (C)
+0.1
-0.7
N.D.
-1.1
+0.2
stress
D-Cycloserine 0.05 mg/ml
-1.0
-0.4
N.D.
+0.1
-0.1
carbon source
D-Ribose (C)
+0.1
-0.7
N.D.
-0.9
+0.1
carbon source
D-Galactose (C)
-0.8
-0.4
N.D.
-0.2
+0.1
stress
Cisplatin 0.0025 mg/ml
-0.8
-0.0
N.D.
-0.3
-0.2
carbon source
L-Arabinose (C)
-0.0
-0.8
N.D.
-0.6
+0.2
nitrogen source
Ammonium chloride (N)
-0.8
-0.1
N.D.
-0.0
-0.3
carbon source
L-Arabinose (C)
+0.5
-0.6
N.D.
-0.9
+0.3
stress
Cobalt chloride 0.4 mM
-0.6
-0.1
N.D.
+0.4
-0.1
motility
inner cut, R2A soft agar motility assay
-0.4
+0.2
N.D.
-0.2
+0.4
lb
LB
+0.4
-0.5
N.D.
+0.1
+0.2
stress
Chlorite 0.1 mM
+0.7
-0.5
N.D.
+0.0
+0.0
stress
Sisomicin 0.001 mg/ml
+0.7
-0.3
N.D.
+0.1
+0.1
carbon source
L-Malic (C)
+1.0
-0.3
N.D.
-0.0
+0.1
stress
syringaldehyde 2.5 mM
+0.1
+0.7
N.D.
+0.5
-0.2
lb
LB
+1.0
-0.1
N.D.
+0.2
+0.0
phage
phage 93.1
+1.0
+0.1
N.D.
+0.0
+0.2
stress
Cobalt chloride 0.32 mM
+1.0
+0.2
N.D.
+0.0
+0.0
pH
LB, pH10
+1.1
+0.3
N.D.
-0.3
+0.3
stress
Zinc 1 mM
+0.7
+0.2
N.D.
+0.1
+0.3
stress
Cisplatin 0.005 mg/ml
+0.8
+0.0
N.D.
+0.4
+0.2
stress
Cobalt chloride 0.16 mM
+1.2
+0.1
N.D.
+0.0
+0.2
carbon source
D-Gluconic Acid (C)
+1.0
+0.2
N.D.
+0.0
+0.2
pH
LB, pH10
+1.5
+0.0
N.D.
+0.1
-0.2
lb
LB
+1.2
+0.2
N.D.
+0.1
+0.0
carbon source
D-Gluconic Acid (C)
+1.0
+0.2
N.D.
+0.1
+0.2
carbon source
a-Ketoglutaric (C)
+0.0
+0.8
N.D.
+0.5
+0.7
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