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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4386 and Ac3H11_4387 are separated by 48 nucleotides
Ac3H11_4387 and Ac3H11_4388 are separated by 67 nucleotides
Ac3H11_4388 and Ac3H11_4389 are separated by 230 nucleotides
Ac3H11_4389 and Ac3H11_4390 overlap by 4 nucleotides
Ac3H11_4386 - Transcriptional regulator, AraC family, at 179,652 to 180,719
_4386
Ac3H11_4387 - Excinuclease ABC subunit A, at 180,768 to 183,857
_4387
Ac3H11_4388 - Esterase/lipase-like, at 183,925 to 184,914
_4388
Ac3H11_4389 - Two-component system response regulator OmpR, at 185,145 to 185,888
_4389
Ac3H11_4390 - integral membrane sensor signal transduction histidine kinase, at 185,885 to 187,267
_4390
Group
Condition
Ac3H11
_4386
Ac3H11
_4387
Ac3H11
_4388
Ac3H11
_4389
Ac3H11
_4390
stress
syringaldehyde 2.5 mM
-0.4
-0.2
-0.4
-0.8
+0.1
stress
D-Cycloserine 0.05 mg/ml
+0.4
-0.3
-0.2
-0.6
-1.0
carbon source
D-Lactate (C)
-0.1
+0.1
-0.6
-0.1
-0.8
nitrogen source
Ammonium chloride (N)
-0.1
+0.1
+0.2
-0.7
-0.8
stress
Cobalt chloride 0.32 mM
-0.1
-0.2
+0.2
-0.5
-0.6
nitrogen source
L-Alanine (N)
+0.2
+0.0
+0.0
-1.2
-0.1
stress
Cisplatin 0.0025 mg/ml
-0.1
-0.2
+0.2
+0.1
-0.8
stress
Cisplatin 0.005 mg/ml
-0.5
-1.3
-0.5
+0.6
+0.8
stress
Cobalt chloride 0.4 mM
+0.5
-0.1
-0.2
-0.4
-0.6
stress
nitrite 10 mM
-0.4
-0.4
-0.4
+0.1
+0.5
stress
Phosphomycin 0.06 mg/ml
-0.2
-0.0
-0.6
-0.2
+0.3
carbon source
D-Galactose (C)
+0.1
+0.3
-0.2
+0.2
-0.8
stress
sodium fluoride 50 mM
+0.1
-0.3
-0.5
-0.1
+0.4
carbon source
pyruvate (C)
+0.1
+0.3
+0.1
-0.4
-0.5
motility
inner cut, R2A soft agar motility assay
-0.2
-0.0
+1.0
-0.7
-0.4
carbon source
propionate (C)
+0.4
-0.3
+0.3
-0.2
-0.3
stress
Chlorite 0.1 mM
+0.1
-0.2
-0.3
+0.0
+0.7
pH
LB, pH9
-0.1
-0.4
+0.3
+0.2
+0.4
stress
Zinc 1 mM
+0.0
-0.6
+0.4
-0.1
+0.7
stress
Cobalt chloride 0.16 mM
-0.0
-0.1
+0.1
-0.4
+1.2
pH
LB, pH10
+0.0
-0.5
+0.4
-0.1
+1.1
lb
LB
-0.2
+0.1
+0.0
-0.0
+1.0
pH
LB, pH10
+0.3
-0.4
-0.3
-0.1
+1.5
stress
Cobalt chloride 0.32 mM
+0.1
-0.1
-0.2
+0.2
+1.0
stress
Paraquat dichloride 0.01 mg/ml
-0.1
+0.1
+0.6
+0.6
+0.1
carbon source
L-Malic (C)
-0.0
+0.3
+0.1
-0.1
+1.0
lb
LB
+0.0
+0.1
-0.1
+0.3
+1.2
phage
phage 93.1
+0.3
-0.0
-0.0
+0.3
+1.0
carbon source
D-Gluconic Acid (C)
+0.1
+0.4
-0.1
+0.1
+1.0
carbon source
D-Gluconic Acid (C)
+0.1
+0.5
+0.2
+0.3
+1.0
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