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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4384 and Ac3H11_4385 overlap by 24 nucleotides
Ac3H11_4385 and Ac3H11_4386 are separated by 93 nucleotides
Ac3H11_4386 and Ac3H11_4387 are separated by 48 nucleotides
Ac3H11_4387 and Ac3H11_4388 are separated by 67 nucleotides
Ac3H11_4384 - putative transport protein, at 177,822 to 179,090
_4384
Ac3H11_4385 - hypothetical protein, at 179,067 to 179,558
_4385
Ac3H11_4386 - Transcriptional regulator, AraC family, at 179,652 to 180,719
_4386
Ac3H11_4387 - Excinuclease ABC subunit A, at 180,768 to 183,857
_4387
Ac3H11_4388 - Esterase/lipase-like, at 183,925 to 184,914
_4388
Group
Condition
Ac3H11
_4384
Ac3H11
_4385
Ac3H11
_4386
Ac3H11
_4387
Ac3H11
_4388
stress
Cisplatin 0.005 mg/ml
-1.3
-0.6
-0.5
-1.3
-0.5
stress
nitrite 10 mM
-0.5
-0.9
-0.4
-0.4
-0.4
lb
LB
-1.6
-0.4
+0.0
+0.0
+0.1
stress
perchlorate 10 mM
-1.0
-0.6
+0.1
-0.3
+0.1
carbon source
D-Glucose (C)
-1.0
-0.4
+0.2
-0.3
+0.1
stress
Zinc 1 mM
-1.1
-0.2
+0.0
-0.6
+0.4
carbon source
D-Lactate (C)
-0.6
-0.3
-0.1
+0.1
-0.6
stress
Chlorite 0.1 mM
-1.5
+0.6
+0.1
-0.2
-0.3
stress
Bacitracin 0.016 mg/ml
-0.9
-0.3
-0.1
-0.1
+0.1
stress
Bacitracin 0.008 mg/ml
-0.9
+0.1
-0.4
-0.3
-0.0
lb
LB
-1.0
+0.3
-0.0
-0.1
-0.4
motility
inner cut, R2A soft agar motility assay
-1.2
+0.9
-0.0
-0.2
-0.5
carbon source
L-Lactate (C)
-0.5
-0.9
+0.3
-0.0
+0.2
stress
Cisplatin 0.0025 mg/ml
-1.2
+0.4
-0.1
-0.2
+0.2
nitrogen source
Ammonium chloride (N)
+0.1
-1.1
-0.1
+0.1
+0.2
stress
perchlorate 25 mM
-0.5
+0.5
-0.3
-0.3
-0.2
stress
Paraquat dichloride 0.01 mg/ml
-1.6
+0.3
-0.1
+0.1
+0.6
carbon source
D-Gluconic Acid (C)
-0.8
-0.3
+0.1
+0.4
-0.1
motility
inner cut, R2A soft agar motility assay
-0.7
-0.6
-0.2
-0.0
+1.0
stress
syringaldehyde 2.5 mM
-0.0
+0.6
-0.4
-0.2
-0.4
phage
phage 93.2
+0.2
-0.7
+0.3
-0.2
+0.1
nitrogen source
L-Histidine (N)
-0.9
-0.0
+0.4
+0.1
+0.0
pH
LB, pH9
+0.4
-0.4
-0.1
-0.4
+0.3
stress
sodium fluoride 50 mM
-0.1
+0.7
+0.1
-0.3
-0.5
stress
Sisomicin 0.004 mg/ml
-0.1
+1.0
-0.2
+0.0
-0.5
stress
copper (II) chloride 1 mM
-0.3
+1.0
-0.1
-0.1
-0.2
pH
LB, pH10
+0.7
+0.1
+0.3
-0.4
-0.3
stress
A22 0.025 mg/ml
-0.4
+0.6
+0.1
-0.2
+0.4
nitrogen source
L-Proline (N)
-0.4
+0.6
+0.1
-0.1
+0.4
pH
LB, pH10
+0.6
+0.2
+0.0
-0.5
+0.4
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