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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4381 and Ac3H11_4382 are separated by 45 nucleotides
Ac3H11_4382 and Ac3H11_4383 are separated by 163 nucleotides
Ac3H11_4383 and Ac3H11_4384 are separated by 124 nucleotides
Ac3H11_4384 and Ac3H11_4385 overlap by 24 nucleotides
Ac3H11_4381 - hypothetical protein, at 176,212 to 176,787
_4381
Ac3H11_4382 - hypothetical protein, at 176,833 to 176,976
_4382
Ac3H11_4383 - Single-stranded DNA-binding protein, at 177,140 to 177,697
_4383
Ac3H11_4384 - putative transport protein, at 177,822 to 179,090
_4384
Ac3H11_4385 - hypothetical protein, at 179,067 to 179,558
_4385
Group
Condition
Ac3H11
_4381
Ac3H11
_4382
Ac3H11
_4383
Ac3H11
_4384
Ac3H11
_4385
stress
Cisplatin 0.005 mg/ml
+0.0
-5.0
N.D.
-1.3
-0.6
nitrogen source
D-Alanine (N)
-0.3
-5.2
N.D.
-0.1
+0.0
lb
LB
+0.1
-2.7
N.D.
-1.6
-0.4
stress
nitrite 10 mM
-0.1
-1.6
N.D.
-0.5
-0.9
phage
phage 93.1
+0.0
-2.3
N.D.
+0.1
-0.3
stress
Cisplatin 0.0025 mg/ml
+0.1
-1.8
N.D.
-1.2
+0.4
stress
nitrate 100 mM
+0.2
-2.5
N.D.
-0.2
+0.2
stress
Chlorite 0.1 mM
+0.1
-1.4
N.D.
-1.5
+0.6
stress
Sisomicin 0.001 mg/ml
+0.2
-1.4
N.D.
-0.7
-0.1
nitrogen source
L-Alanine (N)
-0.1
-1.2
N.D.
-0.5
-0.1
nitrogen source
Ammonium chloride (N)
+0.1
-0.8
N.D.
+0.1
-1.1
stress
perchlorate 10 mM
+0.1
-0.2
N.D.
-1.0
-0.6
stress
Zinc 1 mM
+0.0
-0.3
N.D.
-1.1
-0.2
carbon source
Glycerol (C)
+0.2
-1.0
N.D.
-0.4
-0.2
stress
Paraquat dichloride 0.01 mg/ml
-0.6
+0.6
N.D.
-1.6
+0.3
lb
LB
-0.5
-0.2
N.D.
-1.0
+0.3
carbon source
L-Malic (C)
+0.1
-1.7
N.D.
+0.2
+0.1
motility
inner cut, R2A soft agar motility assay
-0.0
-0.3
N.D.
-1.2
+0.9
carbon source
L-Lactate (C)
+0.3
+0.5
N.D.
-0.5
-0.9
stress
sodium fluoride 20 mM
-0.0
-0.9
N.D.
-0.2
+0.5
motility
inner cut, R2A soft agar motility assay
+0.6
+0.2
N.D.
-0.7
-0.6
stress
copper (II) chloride 1 mM
-0.3
-1.0
N.D.
-0.3
+1.0
phage
phage 93.1
-0.3
-0.9
N.D.
+0.3
+0.6
nitrogen source
L-Proline (N)
+0.2
-0.6
N.D.
-0.4
+0.6
stress
Tetracycline 0.0001 mg/ml
+0.2
-0.7
N.D.
+0.6
+0.3
stress
Bacitracin 0.008 mg/ml
+0.1
+1.2
N.D.
-0.9
+0.1
motility
inner cut, R2A soft agar motility assay
+0.4
+0.6
N.D.
+0.1
-0.6
stress
A22 0.025 mg/ml
-0.1
+0.8
N.D.
-0.4
+0.6
pH
LB, pH10
+0.1
+1.5
N.D.
+0.7
+0.1
stress
Cobalt chloride 0.32 mM
+0.2
+2.0
N.D.
-0.1
+0.8
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