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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4366 and Ac3H11_4367 are separated by 120 nucleotides
Ac3H11_4367 and Ac3H11_4368 are separated by 75 nucleotides
Ac3H11_4368 and Ac3H11_4369 are separated by 52 nucleotides
Ac3H11_4369 and Ac3H11_4370 are separated by 87 nucleotides
Ac3H11_4366 - TcuA: flavoprotein used to oxidize tricarballylate to cis-aconitate, at 153,861 to 155,354
_4366
Ac3H11_4367 - TcuR: regulates tcuABC genes used in utilization of tricarballylate, at 155,475 to 156,422
_4367
Ac3H11_4368 - Outer membrane protein (porin), at 156,498 to 157,562
_4368
Ac3H11_4369 - putative exported protein, at 157,615 to 158,613
_4369
Ac3H11_4370 - FIG00786362: hypothetical protein, at 158,701 to 159,891
_4370
Group
Condition
Ac3H11
_4366
Ac3H11
_4367
Ac3H11
_4368
Ac3H11
_4369
Ac3H11
_4370
stress
perchlorate 10 mM
-0.5
N.D.
-0.1
-0.4
+0.3
stress
Chlorite 0.1 mM
+0.1
N.D.
-0.4
-0.4
+0.0
stress
Phosphomycin 0.06 mg/ml
-0.1
N.D.
-0.1
+0.3
-0.7
stress
copper (II) chloride 2 mM
-0.3
N.D.
-0.4
+0.4
-0.3
motility
inner cut, R2A soft agar motility assay
+0.4
N.D.
-0.6
-0.2
-0.1
stress
copper (II) chloride 1 mM
-0.2
N.D.
-0.8
+0.2
+0.4
stress
Phosphomycin 0.02 mg/ml
-0.2
N.D.
-0.5
+0.1
+0.2
stress
Cisplatin 0.005 mg/ml
-0.5
N.D.
+0.6
+0.3
-0.5
nitrogen source
D-Alanine (N)
-0.1
N.D.
-0.0
-0.5
+0.6
stress
Paraquat dichloride 0.01 mg/ml
+0.1
N.D.
-0.4
-0.1
+0.4
motility
inner cut, R2A soft agar motility assay
-0.1
N.D.
+0.4
-0.5
+0.2
stress
Aluminum chloride 4 mM
-0.1
N.D.
+0.1
-0.3
+0.4
motility
inner cut, R2A soft agar motility assay
+0.0
N.D.
-0.5
+0.3
+0.4
stress
Nickel (II) chloride 0.8 mM
-0.4
N.D.
+0.1
-0.1
+0.8
nitrogen source
Ammonium chloride (N)
-0.2
N.D.
+0.6
-0.5
+0.6
carbon source
D-Ribose (C)
+0.3
N.D.
+0.2
-0.2
+0.3
stress
nitrate 100 mM
+0.0
N.D.
+0.2
-0.2
+0.5
phage
phage 93.2
-0.0
N.D.
-0.3
-0.1
+1.1
stress
perchlorate 25 mM
+0.1
N.D.
-0.2
+0.0
+0.7
nitrogen source
L-Threonine (N)
-0.3
N.D.
-0.4
+0.2
+1.2
carbon source
pyruvate (C)
+0.3
N.D.
+0.3
+0.0
+0.3
nitrogen source
L-tyrosine (N)
+0.0
N.D.
+0.0
+0.4
+0.5
carbon source
D,L-Lactate (C)
+0.2
N.D.
+0.7
+0.0
-0.0
carbon source
L-Arabinose (C)
+0.2
N.D.
+0.2
-0.0
+0.6
lb
LB
+0.2
N.D.
+0.2
+0.1
+0.5
stress
D-Cycloserine 0.05 mg/ml
+0.0
N.D.
+0.7
+0.7
-0.3
carbon source
D-Lactate (C)
+0.1
N.D.
+0.1
+0.2
+0.8
carbon source
D-Galactose (C)
+0.1
N.D.
+0.4
+0.3
+0.5
carbon source
D-Gluconic Acid (C)
+0.2
N.D.
+0.3
-0.1
+1.0
pH
LB, pH10
+0.2
N.D.
+0.5
-0.1
+0.9
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