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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4351 and Ac3H11_4352 overlap by 4 nucleotides
Ac3H11_4352 and Ac3H11_4353 are separated by 21 nucleotides
Ac3H11_4353 and Ac3H11_4354 are separated by 15 nucleotides
Ac3H11_4354 and Ac3H11_4355 overlap by 4 nucleotides
Ac3H11_4351 - sensor histidine kinase/response regulator, at 135,603 to 139,412
_4351
Ac3H11_4352 - Response regulator, at 139,409 to 140,401
_4352
Ac3H11_4353 - FIG00537393: hypothetical protein, at 140,423 to 142,138
_4353
Ac3H11_4354 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 142,154 to 142,684
_4354
Ac3H11_4355 - Na+ driven multidrug efflux pump, at 142,681 to 144,060
_4355
Group
Condition
Ac3H11
_4351
Ac3H11
_4352
Ac3H11
_4353
Ac3H11
_4354
Ac3H11
_4355
stress
Cisplatin 0.0025 mg/ml
+0.2
-1.1
-0.2
-0.1
+0.0
lb
LB
+0.1
-0.9
+0.2
+0.2
-0.5
lb
LB
+0.2
-0.9
+0.0
-0.0
-0.3
motility
inner cut, R2A soft agar motility assay
+0.1
-1.1
-0.0
-0.2
+0.4
carbon source
D-Lactate (C)
+0.1
-0.8
-0.2
+0.0
+0.1
stress
Phosphomycin 0.06 mg/ml
+0.2
-0.9
+0.1
+0.0
-0.0
lb
LB
+0.3
-0.8
+0.1
-0.0
+0.0
pH
LB, pH10
+0.0
-0.6
-0.2
+0.1
+0.4
carbon source
a-Ketoglutaric (C)
+0.1
-0.7
-0.0
-0.1
+0.4
nitrogen source
L-Isoleucine (N)
+0.1
-0.6
+0.1
+0.1
+0.3
stress
Sisomicin 0.001 mg/ml
+0.1
-0.1
-0.0
+0.4
-0.6
carbon source
a-Ketoglutaric (C)
+0.1
+0.5
-0.1
+0.3
-0.8
lb
LB
+0.5
-0.3
+0.3
-0.3
-0.2
carbon source
D-Ribose (C)
+0.2
-0.6
+0.2
+0.3
-0.1
motility
inner cut, R2A soft agar motility assay
+0.1
-0.9
+0.3
+0.1
+0.4
nitrogen source
L-Leucine (N)
+0.2
-0.9
+0.2
+0.0
+0.4
stress
Chlorite 0.1 mM
+0.2
-0.6
+0.1
+0.3
+0.1
stress
D-Cycloserine 0.05 mg/ml
-0.1
-0.5
-0.1
+0.4
+0.4
stress
copper (II) chloride 2 mM
-0.0
-0.2
+0.0
-0.3
+0.6
nitrogen source
L-Histidine (N)
+0.4
-0.5
+0.2
+0.2
-0.0
nitrogen source
L-Threonine (N)
-0.0
-0.6
+0.4
+0.0
+0.5
phage
phage 93.1
-0.3
-0.0
-0.1
+0.4
+0.5
pH
LB, pH5
+0.3
+0.1
+0.3
+0.0
-0.3
stress
copper (II) chloride 1 mM
+0.4
-0.4
+0.2
+0.1
+0.4
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.4
+0.1
+0.1
-0.1
+0.5
phage
phage 93.2
+0.1
+0.5
-0.1
+0.1
+0.4
stress
Zinc 1 mM
+0.1
+0.6
+0.1
+0.1
+0.4
nitrogen source
Ammonium chloride (N)
+0.1
-0.3
+0.9
+0.2
+0.5
stress
nitrite 10 mM
+0.3
+1.0
-0.1
-0.2
+0.4
stress
Cisplatin 0.005 mg/ml
+0.2
+1.0
+0.2
-0.3
+0.5
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