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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4341 and Ac3H11_4342 are separated by 20 nucleotides
Ac3H11_4342 and Ac3H11_4343 are separated by 24 nucleotides
Ac3H11_4343 and Ac3H11_4344 overlap by 10 nucleotides
Ac3H11_4344 and Ac3H11_4345 are separated by 46 nucleotides
Ac3H11_4341 - ThiJ/PfpI family protein, at 126,621 to 127,256
_4341
Ac3H11_4342 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 127,277 to 128,641
_4342
Ac3H11_4343 - hypothetical protein, at 128,666 to 128,794
_4343
Ac3H11_4344 - Regulatory protein, LysR:LysR, substrate-binding, at 128,785 to 129,747
_4344
Ac3H11_4345 - FIG00348314: hypothetical protein, at 129,794 to 130,144
_4345
Group
Condition
Ac3H11
_4341
Ac3H11
_4342
Ac3H11
_4343
Ac3H11
_4344
Ac3H11
_4345
nitrogen source
Uridine (N)
-0.9
-3.2
-0.5
-2.3
-0.1
nitrogen source
L-Leucine (N)
-0.4
+0.4
-0.9
-0.3
-0.5
carbon source
D-Mannose (C)
-0.3
+0.1
-0.8
-0.1
-0.2
stress
Nickel (II) chloride 0.6 mM
-0.5
+0.0
-0.2
-0.1
-0.4
nitrogen source
L-Threonine (N)
-0.5
+0.1
-0.6
-0.0
-0.3
stress
syringaldehyde 2.5 mM
-0.4
-0.1
-0.6
-0.1
-0.0
nitrogen source
L-Proline (N)
-0.0
-0.2
-0.6
-0.1
-0.2
stress
Chlorite 0.1 mM
-0.1
+0.0
+0.0
-0.3
-0.8
stress
Cisplatin 0.0025 mg/ml
-0.5
-0.1
+0.1
-0.3
-0.2
nitrogen source
L-Isoleucine (N)
+0.2
+0.3
-0.9
-0.5
-0.1
nitrogen source
L-tyrosine (N)
+0.1
-0.2
-0.3
-0.2
-0.3
nitrogen source
D-Alanine (N)
-0.3
-0.1
-0.7
-0.3
+0.6
carbon source
D-Gluconic Acid (C)
-0.2
+0.5
-0.9
+0.0
-0.2
carbon source
D-Sorbitol (C)
-0.0
+0.3
-0.6
-0.1
-0.3
nitrogen source
Ammonium chloride (N)
+0.2
+0.8
-1.0
-0.2
-0.5
motility
inner cut, R2A soft agar motility assay
-0.1
+0.1
-1.0
-0.1
+0.6
carbon source
Tween 20 (C)
+0.1
+0.5
-0.4
-0.1
-0.3
carbon source
casaminos (C)
+0.4
-0.0
-0.3
+0.1
-0.4
motility
inner cut, R2A soft agar motility assay
+0.4
-0.1
+0.3
-0.0
-0.6
stress
perchlorate 25 mM
-0.3
-0.1
+0.5
+0.2
-0.3
lb
LB
+0.3
-0.1
+0.2
-0.4
-0.1
carbon source
pyruvate (C)
+0.1
+0.2
-0.4
-0.0
+0.4
stress
Phosphomycin 0.02 mg/ml
+0.2
-0.1
+0.4
+0.2
-0.4
nitrogen source
L-Alanine (N)
-0.3
+0.2
+0.4
-0.1
+0.2
stress
Fusidic 0.001 mg/ml
+0.2
-0.0
+0.7
-0.2
-0.1
stress
Cobalt chloride 0.4 mM
+0.2
+0.1
+0.6
-0.3
+0.0
stress
sodium fluoride 20 mM
+0.3
-0.2
+0.2
-0.1
+0.5
lb
LB
-0.3
-0.2
+0.7
+0.4
+0.0
carbon source
a-Ketoglutaric (C)
+0.5
-0.0
-0.0
+0.3
+0.4
stress
D-Cycloserine 0.05 mg/ml
-2.5
-0.9
+6.0
-1.4
+1.4
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