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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4310 and Ac3H11_4311 are separated by 303 nucleotides
Ac3H11_4311 and Ac3H11_4312 overlap by 4 nucleotides
Ac3H11_4312 and Ac3H11_4313 are separated by 51 nucleotides
Ac3H11_4313 and Ac3H11_4314 are separated by 11 nucleotides
Ac3H11_4310 - FIG00458971: hypothetical protein, at 86,096 to 86,680
_4310
Ac3H11_4311 - ABC-type dipeptide transport system, periplasmic component, at 86,984 to 88,411
_4311
Ac3H11_4312 - ABC-type dipeptide transport system, periplasmic component, at 88,408 to 88,662
_4312
Ac3H11_4313 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 88,714 to 89,664
_4313
Ac3H11_4314 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 89,676 to 90,662
_4314
Group
Condition
Ac3H11
_4310
Ac3H11
_4311
Ac3H11
_4312
Ac3H11
_4313
Ac3H11
_4314
stress
Sisomicin 0.001 mg/ml
-2.8
-0.2
-0.1
-1.1
+0.0
nitrogen source
L-Isoleucine (N)
-3.7
+0.1
+0.1
-0.1
-0.5
carbon source
a-Ketoglutaric (C)
-3.2
-0.0
-0.4
-0.6
+0.3
carbon source
D-Gluconic Acid (C)
-2.3
-0.1
-0.7
-0.7
-0.0
carbon source
L-Malic (C)
-2.9
-0.0
-0.1
+0.1
+0.0
carbon source
propionate (C)
-2.8
-0.2
-0.3
+0.4
-0.0
stress
copper (II) chloride 1 mM
-1.3
+0.1
-0.7
-0.3
-0.4
stress
perchlorate 10 mM
-0.7
-0.2
-0.7
-0.8
-0.3
pH
LB, pH10
-3.1
+0.3
-0.3
+0.1
+0.6
stress
Cobalt chloride 0.4 mM
-1.3
+0.2
-0.7
-0.4
-0.2
stress
Cephalothin 0.005 mg/ml
-1.8
+0.1
-0.1
-0.5
+0.1
lb
LB
-2.0
+0.3
-0.4
+0.1
-0.1
stress
2-Furfuraldehyde 0.06 vol%
-2.1
+0.0
-0.1
+0.3
-0.1
carbon source
D-Fructose (C)
-2.0
+0.0
-0.3
+0.4
+0.0
motility
inner cut, R2A soft agar motility assay
-3.0
-0.2
+0.6
+0.8
-0.0
pH
LB, pH6
-1.4
-0.2
-0.3
+0.3
-0.2
nitrogen source
L-Glutamine (N)
-2.0
-0.1
+0.2
+0.2
-0.0
stress
syringaldehyde 2.5 mM
-2.1
-0.0
+0.2
-0.0
+0.3
stress
Dimethyl Sulfoxide 6 vol%
-1.9
-0.1
+0.2
+0.3
+0.0
stress
nitrate 100 mM
-1.8
-0.0
+0.5
+0.3
+0.0
stress
Zinc 1 mM
-0.2
-0.1
-0.9
+0.6
-0.4
stress
Cisplatin 0.005 mg/ml
-1.7
+0.3
+0.4
+0.2
-0.2
stress
D-Cycloserine 0.05 mg/ml
-0.8
+0.4
-0.0
-0.6
+0.4
carbon source
D-Galactose (C)
-1.2
+0.1
+0.9
+0.1
+0.3
stress
copper (II) chloride 2 mM
+1.2
+0.2
-0.8
-0.4
+0.3
motility
inner cut, R2A soft agar motility assay
-0.7
-0.1
+0.5
+1.2
-0.2
stress
Bacitracin 0.032 mg/ml
+1.6
-0.4
+0.0
-0.2
-0.0
phage
phage 93.1
+1.1
-0.0
+0.9
-0.2
-0.2
nitrogen source
L-Alanine (N)
+1.2
+0.0
+0.8
-0.1
-0.4
nitrogen source
Ammonium chloride (N)
+1.4
-0.2
+0.7
-0.0
-0.2
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