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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4302 and Ac3H11_4303 are separated by 62 nucleotides
Ac3H11_4303 and Ac3H11_4304 are separated by 509 nucleotides
Ac3H11_4304 and Ac3H11_4305 are separated by 311 nucleotides
Ac3H11_4305 and Ac3H11_4306 overlap by 4 nucleotides
Ac3H11_4302 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 76,825 to 78,465
_4302
Ac3H11_4303 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 78,528 to 79,787
_4303
Ac3H11_4304 - Rhodanese-like domain protein, at 80,297 to 80,776
_4304
Ac3H11_4305 - Serine acetyltransferase (EC 2.3.1.30), at 81,088 to 81,771
_4305
Ac3H11_4306 - Predicted transcriptional regulators, at 81,768 to 82,037
_4306
Group
Condition
Ac3H11
_4302
Ac3H11
_4303
Ac3H11
_4304
Ac3H11
_4305
Ac3H11
_4306
nitrogen source
L-Alanine (N)
-0.1
-0.4
-3.4
-0.3
-2.5
stress
Paraquat dichloride 0.01 mg/ml
-0.1
+0.0
-2.6
+0.1
-0.5
stress
Chlorite 0.1 mM
+0.0
+0.2
-1.0
+0.1
-2.0
stress
Cobalt chloride 0.4 mM
-0.3
-0.1
-0.9
-0.0
-0.3
lb
LB
-0.1
+0.1
-0.8
+0.0
-0.8
stress
copper (II) chloride 2 mM
-0.4
-0.3
-1.4
+0.5
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
+0.1
-0.3
-0.4
-0.7
stress
perchlorate 10 mM
-0.1
-0.2
-0.6
-0.8
+0.4
nitrogen source
Ammonium chloride (N)
+0.0
-0.4
-0.9
+0.5
-0.5
stress
copper (II) chloride 1 mM
+0.3
+0.3
-1.4
-0.2
-0.1
carbon source
D-Ribose (C)
+0.1
+0.3
-1.4
-0.0
+0.0
stress
Sisomicin 0.001 mg/ml
+0.0
-0.1
-0.2
-1.2
+0.4
nitrogen source
L-Serine (N)
+0.2
+0.1
-0.8
-0.0
-0.4
stress
perchlorate 25 mM
-0.1
-0.2
-0.9
-0.1
+0.4
lb
LB
-0.1
+0.1
-0.3
+0.4
-0.8
carbon source
a-Ketoglutaric (C)
+0.2
+0.3
-0.9
+0.0
-0.2
carbon source
L-Lactate (C)
-0.0
+0.1
-0.2
+0.4
-0.8
carbon source
succinate (C)
+0.1
-0.1
-0.8
-0.0
+0.6
carbon source
D-Gluconic Acid (C)
-0.1
+0.1
-0.9
-0.3
+1.0
stress
Phosphomycin 0.06 mg/ml
-0.3
+0.4
-0.5
+0.0
+0.6
stress
A22 0.025 mg/ml
+0.1
+0.1
+1.0
-0.6
-0.3
stress
Cobalt chloride 0.32 mM
+0.2
-0.1
-0.2
-0.4
+1.0
pH
LB, pH10
+0.5
+0.0
+0.8
-0.4
-0.5
stress
Cisplatin 0.0025 mg/ml
-0.1
+0.1
-0.0
-0.5
+1.0
nitrogen source
D-Alanine (N)
-0.2
+0.2
+1.4
+0.1
-0.7
stress
Sisomicin 0.004 mg/ml
-0.2
+0.2
+0.9
+0.2
-0.2
phage
phage 93.2
-0.2
-0.4
+2.1
-0.1
-0.2
pH
LB, pH10
+0.6
-0.1
+0.7
+0.2
-0.1
stress
Thallium(I) acetate 0.0006 mg/ml
+0.1
+0.2
+0.4
+0.2
+0.8
stress
nitrite 10 mM
+0.1
+0.1
+0.8
-0.0
+1.6
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