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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4283 and Ac3H11_4284 overlap by 44 nucleotides
Ac3H11_4284 and Ac3H11_4285 are separated by 75 nucleotides
Ac3H11_4285 and Ac3H11_4286 are separated by 213 nucleotides
Ac3H11_4286 and Ac3H11_4287 overlap by 1 nucleotides
Ac3H11_4283 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 59,261 to 61,324
_4283
Ac3H11_4284 - hypothetical protein, at 61,281 to 61,403
_4284
Ac3H11_4285 - diguanylate cyclase, at 61,479 to 62,735
_4285
Ac3H11_4286 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 62,949 to 64,439
_4286
Ac3H11_4287 - hypothetical protein, at 64,439 to 65,023
_4287
Group
Condition
Ac3H11
_4283
Ac3H11
_4284
Ac3H11
_4285
Ac3H11
_4286
Ac3H11
_4287
stress
Bacitracin 0.008 mg/ml
-0.3
N.D.
-4.7
+0.1
+0.2
carbon source
D-Gluconic Acid (C)
+0.1
N.D.
-4.2
+0.1
+0.0
stress
Chlorite 0.1 mM
-0.1
N.D.
-2.9
+0.1
-0.1
stress
Aluminum chloride 2 mM
+0.0
N.D.
-2.9
-0.1
+0.0
carbon source
pyruvate (C)
-0.1
N.D.
-2.5
+0.1
-0.3
stress
Aluminum chloride 4 mM
-0.1
N.D.
-2.4
-0.0
-0.0
motility
inner cut, R2A soft agar motility assay
+0.2
N.D.
-2.1
-0.4
-0.1
stress
perchlorate 25 mM
-0.0
N.D.
-2.7
+0.2
+0.1
carbon source
D-Lactate (C)
-0.3
N.D.
-2.0
+0.1
-0.1
lb
LB
-0.0
N.D.
-2.2
+0.4
-0.5
carbon source
L-Asparagine (C)
-0.3
N.D.
-1.8
+0.1
-0.0
nitrogen source
L-tyrosine (N)
-0.1
N.D.
-1.4
-0.1
-0.2
nitrogen source
L-Serine (N)
-0.1
N.D.
-1.6
-0.0
+0.1
carbon source
L-Glutamine (C)
-0.1
N.D.
-1.4
-0.1
-0.0
nitrogen source
L-Alanine (N)
-0.2
N.D.
-1.0
-0.0
-0.3
phage
phage 93.1
-0.0
N.D.
-1.5
+0.0
+0.0
carbon source
Glycerol (C)
-0.1
N.D.
-1.2
-0.1
-0.0
carbon source
D-Lactate (C)
+0.0
N.D.
-1.2
-0.2
-0.0
stress
Ceftazidime 0.01 mg/ml
-0.2
N.D.
-1.1
-0.0
+0.0
lb
LB
+0.1
N.D.
-1.6
+0.3
+0.0
stress
Cobalt chloride 0.32 mM
-0.1
N.D.
-1.2
-0.1
+0.2
stress
nitrite 10 mM
-0.1
N.D.
-1.1
+0.1
+0.2
phage
phage 93.1
-0.2
N.D.
-0.9
+0.2
-0.1
stress
A22 0.025 mg/ml
+0.0
N.D.
-1.1
+0.3
+0.2
stress
Cisplatin 0.005 mg/ml
+0.4
N.D.
-1.2
+0.2
+0.1
pH
LB, pH10
-0.2
N.D.
+0.8
-0.3
-0.2
lb
LB
-0.0
N.D.
+1.0
-0.0
-0.3
stress
syringaldehyde 2.5 mM
-0.0
N.D.
+1.3
-0.1
-0.1
nitrogen source
Uridine (N)
+0.0
N.D.
+1.2
-0.0
+0.1
carbon source
D-Galactose (C)
+0.1
N.D.
+1.8
+0.1
+0.1
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