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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_4271 and Ac3H11_4272 overlap by 4 nucleotides
Ac3H11_4272 and Ac3H11_4273 are separated by 147 nucleotides
Ac3H11_4273 and Ac3H11_4274 are separated by 225 nucleotides
Ac3H11_4274 and Ac3H11_4275 are separated by 352 nucleotides
Ac3H11_4271 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45), at 49,114 to 49,683
_4271
Ac3H11_4272 - Probable transmembrane protein, at 49,680 to 50,297
_4272
Ac3H11_4273 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 50,445 to 51,221
_4273
Ac3H11_4274 - RNA-binding protein, at 51,447 to 51,983
_4274
Ac3H11_4275 - RNA-binding protein, at 52,336 to 52,767
_4275
Group
Condition
Ac3H11
_4271
Ac3H11
_4272
Ac3H11
_4273
Ac3H11
_4274
Ac3H11
_4275
pH
LB, pH10
-0.6
N.D.
-0.7
-5.9
N.D.
nitrogen source
L-tyrosine (N)
-0.7
N.D.
-0.9
-4.3
N.D.
pH
LB, pH10
-0.5
N.D.
-0.6
-4.2
N.D.
carbon source
a-Ketoglutaric (C)
-0.5
N.D.
-0.7
-1.7
N.D.
carbon source
succinate (C)
-1.0
N.D.
-0.5
-1.1
N.D.
pH
LB, pH9
-0.5
N.D.
-0.8
-1.4
N.D.
pH
LB, pH5
-0.2
N.D.
-0.1
-2.1
N.D.
pH
LB, pH5
-0.4
N.D.
-0.1
-1.9
N.D.
carbon source
succinate (C)
-0.7
N.D.
-0.7
-0.8
N.D.
carbon source
D-Gluconic Acid (C)
-0.6
N.D.
-0.6
-0.9
N.D.
stress
Bacitracin 0.016 mg/ml
-0.6
N.D.
-0.1
-1.3
N.D.
carbon source
D-Lactate (C)
-0.8
N.D.
-0.6
-0.6
N.D.
carbon source
D-Ribose (C)
-0.7
N.D.
-0.2
-1.0
N.D.
stress
Cobalt chloride 0.32 mM
-0.1
N.D.
-0.2
-1.5
N.D.
stress
Bacitracin 0.032 mg/ml
-0.8
N.D.
-0.6
-0.4
N.D.
carbon source
D,L-Lactate (C)
-0.6
N.D.
-0.4
-0.7
N.D.
carbon source
a-Ketoglutaric (C)
-0.9
N.D.
-0.3
-0.4
N.D.
stress
Fusidic 0.001 mg/ml
-0.5
N.D.
-0.3
-0.9
N.D.
lb
LB
+0.0
N.D.
-0.5
-1.2
N.D.
nitrogen source
L-Proline (N)
-1.0
N.D.
-0.0
-0.6
N.D.
nitrogen source
D-Alanine (N)
-1.7
N.D.
-0.0
+0.2
N.D.
stress
A22 0.025 mg/ml
-0.1
N.D.
-0.3
-1.1
N.D.
lb
LB
+0.1
N.D.
-0.0
-1.5
N.D.
stress
Sisomicin 0.001 mg/ml
+0.4
N.D.
-0.1
-1.3
N.D.
nitrogen source
L-Leucine (N)
-0.7
N.D.
+0.6
-0.8
N.D.
lb
LB
+0.6
N.D.
+0.1
-1.1
N.D.
nitrogen source
L-Threonine (N)
-0.8
N.D.
+0.6
+0.5
N.D.
stress
Cobalt chloride 0.4 mM
-0.5
N.D.
+0.8
+0.3
N.D.
stress
Cobalt chloride 0.32 mM
-0.5
N.D.
+1.3
+0.1
N.D.
stress
D-Cycloserine 0.05 mg/ml
-0.3
N.D.
+0.8
+2.7
N.D.
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