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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4239 and Ac3H11_4240 are separated by 76 nucleotides
Ac3H11_4240 and Ac3H11_4241 are separated by 11 nucleotides
Ac3H11_4241 and Ac3H11_4242 are separated by 69 nucleotides
Ac3H11_4242 and Ac3H11_4243 are separated by 19 nucleotides
Ac3H11_4239 - peptidase, M48 family, at 10,273 to 11,580
_4239
Ac3H11_4240 - hypothetical protein, at 11,657 to 11,806
_4240
Ac3H11_4241 - hypothetical protein, at 11,818 to 12,090
_4241
Ac3H11_4242 - Acylphosphate phosphohydrolase (EC 3.6.1.7), putative, at 12,160 to 12,462
_4242
Ac3H11_4243 - FIG003003: hypothetical protein, at 12,482 to 13,276
_4243
Group
Condition
Ac3H11
_4239
Ac3H11
_4240
Ac3H11
_4241
Ac3H11
_4242
Ac3H11
_4243
stress
Nickel (II) chloride 0.6 mM
-0.2
-1.3
-2.8
N.D.
-0.2
nitrogen source
L-Alanine (N)
-0.6
+0.1
-3.2
N.D.
-0.2
stress
Cisplatin 0.005 mg/ml
-0.9
-0.6
-0.5
N.D.
-0.2
pH
LB, pH10
-0.1
-0.3
-1.6
N.D.
-0.1
lb
LB
-0.5
+0.1
-1.3
N.D.
-0.2
pH
LB, pH8
-0.0
+0.0
-1.7
N.D.
-0.1
carbon source
L-Malic (C)
+0.1
-0.9
-0.8
N.D.
-0.2
nitrogen source
L-Histidine (N)
-0.4
+0.3
-1.5
N.D.
-0.1
lb
LB
+0.0
-0.1
-1.6
N.D.
+0.2
nitrogen source
Ammonium chloride (N)
-0.1
+0.5
-1.4
N.D.
-0.5
carbon source
L-Glutamine (C)
-0.2
-0.1
-1.3
N.D.
+0.1
nitrogen source
L-Serine (N)
-0.1
+0.2
-1.5
N.D.
-0.0
motility
inner cut, R2A soft agar motility assay
-0.1
-0.4
-1.0
N.D.
+0.3
stress
Cephalothin 0.025 mg/ml
-0.1
+0.2
-1.2
N.D.
-0.2
pH
LB, pH9
+0.0
-0.2
-1.3
N.D.
+0.2
nitrogen source
L-Isoleucine (N)
-0.1
+0.4
-0.7
N.D.
-0.8
stress
copper (II) chloride 2 mM
+0.4
-0.0
-1.5
N.D.
-0.1
stress
Cisplatin 0.0025 mg/ml
+0.1
+0.1
-1.0
N.D.
-0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.0
+0.2
-1.4
N.D.
+0.1
lb
LB
-0.1
+0.4
-1.2
N.D.
-0.1
stress
D-Cycloserine 0.05 mg/ml
+0.2
-0.1
-1.3
N.D.
+0.2
stress
Cobalt chloride 0.32 mM
+0.1
+0.3
-1.2
N.D.
-0.0
stress
nitrite 10 mM
-0.2
-0.8
+0.4
N.D.
-0.2
stress
Bacitracin 0.008 mg/ml
+0.2
-0.9
+0.3
N.D.
-0.1
stress
Cobalt chloride 0.16 mM
-0.3
+0.7
-0.5
N.D.
-0.2
stress
Phosphomycin 0.02 mg/ml
+0.2
-0.6
+0.4
N.D.
-0.3
stress
Cobalt chloride 0.4 mM
+0.2
-1.0
+1.2
N.D.
-0.2
phage
phage 93.2
-0.1
+0.1
+1.1
N.D.
-0.6
carbon source
D,L-Lactate (C)
+0.0
-0.3
+1.6
N.D.
+0.0
stress
perchlorate 10 mM
+0.0
+0.0
+1.5
N.D.
-0.3
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