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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4236 and Ac3H11_4237 are separated by 141 nucleotides
Ac3H11_4237 and Ac3H11_4238 are separated by 13 nucleotides
Ac3H11_4238 and Ac3H11_4239 are separated by 360 nucleotides
Ac3H11_4239 and Ac3H11_4240 are separated by 76 nucleotides
Ac3H11_4236 - Homoserine dehydrogenase (EC 1.1.1.3), at 7,551 to 8,942
_4236
Ac3H11_4237 - hypothetical protein, at 9,084 to 9,209
_4237
Ac3H11_4238 - peptidase M48, Ste24p, at 9,223 to 9,912
_4238
Ac3H11_4239 - peptidase, M48 family, at 10,273 to 11,580
_4239
Ac3H11_4240 - hypothetical protein, at 11,657 to 11,806
_4240
Group
Condition
Ac3H11
_4236
Ac3H11
_4237
Ac3H11
_4238
Ac3H11
_4239
Ac3H11
_4240
nitrogen source
L-Threonine (N)
-6.2
-5.1
-0.1
-0.1
-0.0
nitrogen source
L-Serine (N)
-2.4
-1.3
-0.2
-0.1
+0.2
stress
Cisplatin 0.005 mg/ml
-0.1
-0.4
-0.1
-0.9
-0.6
motility
inner cut, R2A soft agar motility assay
-0.3
-0.6
+0.2
-0.1
-0.9
stress
Nickel (II) chloride 0.6 mM
-0.3
+0.1
-0.1
-0.2
-1.3
motility
inner cut, R2A soft agar motility assay
-0.3
-0.4
-0.2
-0.1
-0.4
stress
Cobalt chloride 0.4 mM
-0.4
+0.2
-0.1
+0.2
-1.0
nitrogen source
L-Alanine (N)
-0.3
-0.0
-0.1
-0.6
+0.1
carbon source
D-Gluconic Acid (C)
-0.6
+0.4
+0.0
-0.5
-0.4
carbon source
L-Malic (C)
-0.0
-0.2
+0.1
+0.1
-0.9
lb
LB
+0.1
-0.4
-0.1
-0.5
+0.1
stress
nitrite 10 mM
+0.1
+0.3
+0.0
-0.2
-0.8
stress
Bacitracin 0.008 mg/ml
+0.1
-0.1
+0.1
+0.2
-0.9
nitrogen source
Uridine (N)
-0.3
+0.6
-0.3
-0.1
-0.1
stress
nitrate 45 mM
-0.2
+0.5
+0.0
-0.2
-0.3
stress
copper (II) chloride 2 mM
-0.0
-0.6
+0.2
+0.4
-0.0
stress
D-Cycloserine 0.05 mg/ml
+1.0
-1.0
-0.1
+0.2
-0.1
nitrogen source
Ammonium chloride (N)
-0.7
+0.4
-0.1
-0.1
+0.5
pH
LB, pH10
-0.7
+0.4
-0.1
+0.5
-0.1
stress
Phosphomycin 0.02 mg/ml
+0.2
+0.4
-0.0
+0.2
-0.6
stress
Cobalt chloride 0.16 mM
+0.1
-0.2
+0.0
-0.3
+0.7
carbon source
D-Lactate (C)
+0.2
+0.4
+0.3
-0.2
-0.2
nitrogen source
L-tyrosine (N)
-0.3
+0.4
-0.0
-0.0
+0.5
stress
sodium fluoride 25 mM
+0.5
+0.6
+0.1
-0.1
-0.3
stress
nitrate 100 mM
+0.3
+0.3
-0.0
-0.3
+0.4
nitrogen source
L-Arginine (N)
-0.2
+0.7
-0.0
-0.3
+0.6
nitrogen source
L-Isoleucine (N)
-0.3
+1.0
-0.1
-0.1
+0.4
stress
Fusidic 0.001 mg/ml
+0.1
+0.3
+0.2
+0.5
-0.1
stress
sodium fluoride 20 mM
+0.9
+1.3
+0.1
+0.0
+0.1
stress
sodium fluoride 35 mM
+1.2
+1.5
+0.2
-0.1
+0.1
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