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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4206 and Ac3H11_4207 are separated by 114 nucleotides
Ac3H11_4207 and Ac3H11_4208 are separated by 401 nucleotides
Ac3H11_4208 and Ac3H11_4209 are separated by 272 nucleotides
Ac3H11_4209 and Ac3H11_4210 are separated by 392 nucleotides
Ac3H11_4206 - SAM-dependent methyltransferases, at 476,004 to 476,624
_4206
Ac3H11_4207 - Flagellar hook-basal body complex protein FliE, at 476,739 to 476,858
_4207
Ac3H11_4208 - Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP), at 477,260 to 478,243
_4208
Ac3H11_4209 - Heavy metal sensor histidine kinase, at 478,516 to 479,532
_4209
Ac3H11_4210 - DNA-binding heavy metal response regulator, at 479,925 to 480,605
_4210
Group
Condition
Ac3H11
_4206
Ac3H11
_4207
Ac3H11
_4208
Ac3H11
_4209
Ac3H11
_4210
nitrogen source
L-Alanine (N)
+0.1
-1.6
+0.2
+0.3
-0.7
stress
nitrite 10 mM
-0.0
-0.8
+0.1
+0.0
+0.4
stress
copper (II) chloride 1 mM
-0.1
+0.8
+0.1
+0.0
-0.7
nitrogen source
D-Alanine (N)
+0.0
-0.5
-0.0
-0.1
+0.9
nitrogen source
L-Threonine (N)
-0.2
-0.4
+0.3
+0.2
+0.6
stress
D-Cycloserine 0.05 mg/ml
+0.4
+0.4
+0.3
-0.1
-0.3
temperature
LB 30C
+0.1
+0.5
+0.3
+0.4
-0.3
stress
copper (II) chloride 2 mM
-0.3
+0.4
+0.3
+0.2
+0.4
carbon source
a-Ketoglutaric (C)
+0.3
+0.6
+0.1
+0.4
-0.1
pH
LB, pH10
+0.5
+0.5
+0.2
+0.4
-0.4
carbon source
D-Mannose (C)
+0.1
+0.3
+0.3
-0.0
+0.6
stress
Nickel (II) chloride 0.8 mM
+0.3
+0.4
+0.1
+0.1
+0.5
phage
phage 93.1
+0.5
+0.1
+0.3
+0.3
+0.2
carbon source
D-Sorbitol (C)
+0.2
+0.2
+0.3
+0.2
+0.7
carbon source
succinate (C)
+0.3
+0.5
+0.4
+0.3
-0.0
carbon source
D-Lactate (C)
+0.2
+0.5
+0.3
+0.4
+0.1
temperature
LB 23C
+0.3
+0.6
+0.1
+0.2
+0.3
temperature
LB 30C
+0.3
+0.5
+0.4
+0.3
+0.2
phage
phage 93.2
+0.7
+0.2
+0.4
+0.4
-0.1
nitrogen source
L-Isoleucine (N)
+0.0
+0.2
+0.3
-0.0
+1.1
carbon source
D,L-Lactate (C)
+0.2
+0.2
+0.4
+0.4
+0.4
carbon source
L-Lactate (C)
+0.2
+0.6
+0.3
+0.1
+0.5
nitrogen source
Ammonium chloride (N)
-0.2
+0.4
+0.5
+0.2
+0.9
carbon source
D-Lactate (C)
+0.3
+0.6
+0.5
+0.5
+0.1
carbon source
D,L-Lactate (C)
+0.3
+0.5
+0.4
+0.4
+0.4
carbon source
succinate (C)
+0.3
+0.7
+0.4
+0.4
+0.2
carbon source
D-Lactate (C)
+0.4
+0.4
+0.2
+0.2
+0.7
carbon source
pyruvate (C)
+0.4
+0.7
+0.5
+0.3
+0.3
pH
LB, pH10
+0.1
+0.7
+0.6
+0.4
+0.4
carbon source
L-Lactate (C)
+0.4
+0.5
+0.6
+0.5
+0.2
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