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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4192 and Ac3H11_4193 are separated by 682 nucleotides
Ac3H11_4193 and Ac3H11_4194 are separated by 156 nucleotides
Ac3H11_4194 and Ac3H11_4195 overlap by 38 nucleotides
Ac3H11_4195 and Ac3H11_4196 are separated by 258 nucleotides
Ac3H11_4192 - hypothetical protein, at 449,933 to 450,337
_4192
Ac3H11_4193 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 451,020 to 454,256
_4193
Ac3H11_4194 - DNA polymerase-like protein PA0670, at 454,413 to 455,957
_4194
Ac3H11_4195 - RecA/RadA recombinase, at 455,920 to 456,783
_4195
Ac3H11_4196 - metal dependent phosphohydrolase, at 457,042 to 457,290
_4196
Group
Condition
Ac3H11
_4192
Ac3H11
_4193
Ac3H11
_4194
Ac3H11
_4195
Ac3H11
_4196
stress
Cisplatin 0.005 mg/ml
+0.2
-3.8
-4.8
-2.9
+0.7
stress
Cisplatin 0.0025 mg/ml
-0.6
-1.9
-2.3
-1.6
-0.9
stress
Sisomicin 0.001 mg/ml
-0.2
+0.1
-4.8
+0.3
+0.1
nitrogen source
L-Alanine (N)
+0.4
+0.1
+0.0
+0.3
-5.1
motility
inner cut, R2A soft agar motility assay
+0.0
+0.1
-0.6
-1.1
-1.9
stress
Chlorite 0.1 mM
-0.6
-0.0
+0.6
+0.3
-2.6
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
+0.2
-1.6
-0.0
-0.5
carbon source
pyruvate (C)
-0.2
+0.2
-1.6
+0.3
+0.2
stress
nitrate 100 mM
-0.5
-0.2
+0.2
+0.6
-1.2
stress
copper (II) chloride 2 mM
+0.0
-0.1
-1.1
+0.6
-0.4
stress
2-Furfuraldehyde 0.06 vol%
-0.3
+0.0
-1.2
+0.2
+0.4
carbon source
D-Gluconic Acid (C)
-0.6
+0.2
+0.6
+0.5
-1.3
pH
LB, pH10
+0.4
+0.2
+1.0
+0.1
-2.4
carbon source
a-Ketoglutaric (C)
-0.0
+0.4
-0.6
+0.4
-0.7
carbon source
succinate (C)
-0.1
+0.0
-1.2
+0.3
+0.6
carbon source
D-Fructose (C)
+0.2
+0.2
-1.1
+0.5
+0.1
nitrogen source
L-Leucine (N)
-0.3
+0.2
+1.5
-0.2
-1.3
pH
LB, pH8
+0.4
+0.2
-1.1
+0.2
+0.4
carbon source
succinate (C)
-0.1
+0.1
-1.0
+0.3
+1.0
phage
phage 93.2
+0.3
+0.2
+0.7
+0.1
-0.9
carbon source
a-Ketoglutaric (C)
+0.3
+0.1
+0.5
+0.4
-0.8
carbon source
Glycerol (C)
-0.2
+0.1
+0.2
+0.5
+1.1
carbon source
D-Ribose (C)
-0.1
+0.1
+1.1
+0.4
+0.3
stress
syringaldehyde 2.5 mM
-0.0
+0.2
+1.4
+0.6
-0.3
stress
Cobalt chloride 0.4 mM
-0.2
+0.1
-0.3
+1.2
+0.9
pH
LB, pH5
+0.2
+0.2
+0.8
+0.5
+0.3
carbon source
L-Arabinose (C)
+0.2
+0.3
+0.4
+0.3
+0.9
lb
LB
-0.3
+0.1
+1.1
+0.3
+0.9
stress
Nickel (II) chloride 0.8 mM
+0.3
+0.2
+1.5
+0.3
+0.1
carbon source
D-Gluconic Acid (C)
-0.1
+0.3
+0.9
+1.4
+0.6
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