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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4190 and Ac3H11_4191 are separated by 57 nucleotides
Ac3H11_4191 and Ac3H11_4192 are separated by 282 nucleotides
Ac3H11_4192 and Ac3H11_4193 are separated by 682 nucleotides
Ac3H11_4193 and Ac3H11_4194 are separated by 156 nucleotides
Ac3H11_4190 - Similar to ribosomal large subunit pseudouridine synthase A, at 448,514 to 449,431
_4190
Ac3H11_4191 - Alkaline phosphatase (EC 3.1.3.1), at 449,489 to 449,650
_4191
Ac3H11_4192 - hypothetical protein, at 449,933 to 450,337
_4192
Ac3H11_4193 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 451,020 to 454,256
_4193
Ac3H11_4194 - DNA polymerase-like protein PA0670, at 454,413 to 455,957
_4194
Group
Condition
Ac3H11
_4190
Ac3H11
_4191
Ac3H11
_4192
Ac3H11
_4193
Ac3H11
_4194
stress
Cisplatin 0.005 mg/ml
+0.6
N.D.
+0.2
-3.8
-4.8
stress
Sisomicin 0.001 mg/ml
+0.5
N.D.
-0.2
+0.1
-4.8
stress
Cisplatin 0.0025 mg/ml
+0.7
N.D.
-0.6
-1.9
-2.3
carbon source
pyruvate (C)
+0.2
N.D.
-0.2
+0.2
-1.6
stress
2-Furfuraldehyde 0.06 vol%
-0.1
N.D.
-0.3
+0.0
-1.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.2
N.D.
-0.1
+0.2
-1.6
carbon source
succinate (C)
+0.1
N.D.
-0.1
+0.0
-1.2
nitrogen source
L-Threonine (N)
+0.0
N.D.
+0.0
+0.2
-1.1
stress
copper (II) chloride 2 mM
+0.4
N.D.
+0.0
-0.1
-1.1
carbon source
D-Fructose (C)
-0.0
N.D.
+0.2
+0.2
-1.1
nitrogen source
L-Arginine (N)
+0.1
N.D.
+0.2
+0.2
-1.0
pH
LB, pH8
+0.0
N.D.
+0.4
+0.2
-1.1
nitrogen source
D-Alanine (N)
-0.3
N.D.
-0.4
+0.2
+0.6
stress
Cobalt chloride 0.32 mM
-0.6
N.D.
+0.1
-0.1
+0.7
stress
Chlorite 0.1 mM
+0.3
N.D.
-0.6
-0.0
+0.6
stress
Nickel (II) chloride 0.6 mM
+0.4
N.D.
-0.5
+0.1
+0.4
stress
nitrite 10 mM
+0.2
N.D.
-0.7
+0.0
+0.9
pH
LB, pH10
+0.2
N.D.
+0.4
+0.5
-0.4
carbon source
D-Gluconic Acid (C)
+0.5
N.D.
-0.6
+0.2
+0.6
carbon source
D-Ribose (C)
+0.1
N.D.
-0.1
+0.1
+1.1
pH
LB, pH5
+0.1
N.D.
+0.2
+0.2
+0.8
carbon source
D-Gluconic Acid (C)
+0.4
N.D.
-0.1
+0.3
+0.9
nitrogen source
L-Leucine (N)
+0.1
N.D.
-0.3
+0.2
+1.5
temperature
LB 30C
+0.0
N.D.
+0.4
+0.3
+0.7
phage
phage 93.2
+0.3
N.D.
+0.3
+0.2
+0.7
lb
LB
+0.5
N.D.
-0.3
+0.1
+1.1
lb
LB
+0.2
N.D.
+0.5
+0.1
+0.7
stress
syringaldehyde 2.5 mM
+0.1
N.D.
-0.0
+0.2
+1.4
stress
Nickel (II) chloride 0.8 mM
-0.2
N.D.
+0.3
+0.2
+1.5
pH
LB, pH10
+0.4
N.D.
+0.4
+0.2
+1.0
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