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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4184 and Ac3H11_4185 are separated by 147 nucleotides
Ac3H11_4185 and Ac3H11_4186 are separated by 39 nucleotides
Ac3H11_4186 and Ac3H11_4187 are separated by 125 nucleotides
Ac3H11_4187 and Ac3H11_4228 are separated by 217 nucleotides
Ac3H11_4184 - Aldehyde dehydrogenase B (EC 1.2.1.22), at 441,129 to 442,625
_4184
Ac3H11_4185 - hypothetical protein, at 442,773 to 443,051
_4185
Ac3H11_4186 - putative membrane protein, at 443,091 to 444,284
_4186
Ac3H11_4187 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 444,410 to 445,378
_4187
Ac3H11_4228 - tRNA-Gly-CCC, at 445,596 to 445,666
_4228
Group
Condition
Ac3H11
_4184
Ac3H11
_4185
Ac3H11
_4186
Ac3H11
_4187
Ac3H11
_4228
stress
Paraquat dichloride 0.01 mg/ml
-0.1
-3.7
+0.2
+0.2
+0.1
stress
sodium fluoride 20 mM
-0.0
-3.1
+0.2
-0.2
+0.0
stress
Chlorite 0.1 mM
-0.0
-2.4
-0.2
+0.1
+0.0
pH
LB, pH5
+0.0
-2.2
-0.3
+0.1
-0.0
stress
Aluminum chloride 2 mM
+0.1
-2.5
+0.1
-0.0
+0.1
nitrogen source
Ammonium chloride (N)
+0.9
-3.3
-0.3
+0.3
+0.3
phage
phage 93.1
-0.2
-2.6
+0.1
+0.3
+0.3
phage
phage 93.2
+0.0
-2.5
+0.3
+0.1
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.1
-2.0
+0.4
+0.1
-0.1
nitrogen source
L-Glutamine (N)
+0.1
-1.6
-0.0
+0.1
+0.2
nitrogen source
L-Isoleucine (N)
+0.2
-1.5
-0.4
+0.2
+0.4
nitrogen source
L-Threonine (N)
+0.3
-1.4
-0.3
+0.3
+0.1
stress
Phosphomycin 0.06 mg/ml
+0.0
-1.6
-0.0
+0.3
+0.3
nitrogen source
D-Alanine (N)
-0.0
-1.4
-0.0
+0.3
+0.5
stress
copper (II) chloride 1 mM
+0.3
-1.2
-0.3
+0.1
+0.4
lb
LB
+0.2
-1.3
+0.3
+0.2
-0.0
pH
LB, pH10
+0.4
-1.2
-0.2
+0.4
+0.4
stress
Cisplatin 0.005 mg/ml
+0.4
-0.8
+0.4
+0.3
+0.2
pH
LB, pH9
-0.1
+1.1
-0.6
+0.2
+0.0
carbon source
succinate (C)
+0.6
-0.3
+0.3
+0.3
+0.4
motility
inner cut, R2A soft agar motility assay
-0.0
+1.5
-0.3
+0.3
+0.0
carbon source
a-Ketoglutaric (C)
-0.1
+1.4
+0.4
-0.0
-0.2
motility
inner cut, R2A soft agar motility assay
-0.2
+1.0
+0.3
+0.1
+0.4
pH
LB, pH7
+0.3
+1.0
+0.4
+0.2
+0.1
carbon source
D-Lactate (C)
+0.4
+0.5
+0.4
+0.4
+0.2
carbon source
D-Gluconic Acid (C)
+0.3
+0.6
+0.4
+0.1
+0.5
carbon source
a-Ketoglutaric (C)
+0.2
+1.0
+0.2
+0.4
+0.2
temperature
LB 23C
+0.4
+0.7
+0.3
+0.4
+0.2
carbon source
D-Ribose (C)
+0.2
+1.0
+0.3
+0.1
+0.4
temperature
LB 30C
+0.4
+0.7
+0.4
+0.4
+0.4
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