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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4152 and Ac3H11_4153 are separated by 92 nucleotides
Ac3H11_4153 and Ac3H11_4154 are separated by 172 nucleotides
Ac3H11_4154 and Ac3H11_4155 are separated by 32 nucleotides
Ac3H11_4155 and Ac3H11_4156 overlap by 4 nucleotides
Ac3H11_4152 - Rhodanese domain protein UPF0176, Betaproteobacterial subgroup, at 405,032 to 405,781
_4152
Ac3H11_4153 - periplasmic binding protein, putative, at 405,874 to 406,662
_4153
Ac3H11_4154 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 406,835 to 409,249
_4154
Ac3H11_4155 - Pirin-related protein, at 409,282 to 410,199
_4155
Ac3H11_4156 - OsmC family protein, at 410,196 to 410,603
_4156
Group
Condition
Ac3H11
_4152
Ac3H11
_4153
Ac3H11
_4154
Ac3H11
_4155
Ac3H11
_4156
stress
Cisplatin 0.0025 mg/ml
-0.5
-0.3
-0.3
+0.2
-0.7
stress
Paraquat dichloride 0.01 mg/ml
-1.0
-0.1
-0.1
-0.0
-0.0
carbon source
D-Gluconic Acid (C)
-0.1
+0.1
+0.3
+0.0
-0.7
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.3
+0.1
+0.1
-0.5
nitrogen source
L-Arginine (N)
+0.2
-0.5
-0.3
+0.1
+0.3
nitrogen source
L-Leucine (N)
+0.5
-0.2
-0.3
+0.2
-0.2
nitrogen source
Ammonium chloride (N)
+0.4
+0.4
-0.1
+0.2
-0.7
motility
inner cut, R2A soft agar motility assay
-0.6
+0.5
+0.3
+0.1
+0.1
carbon source
pyruvate (C)
-0.2
+0.3
+0.3
+0.3
+0.2
carbon source
Glycerol (C)
-0.2
+0.3
+0.2
+0.2
+0.4
pH
LB, pH10
+0.6
+0.2
+0.2
+0.2
-0.1
pH
LB, pH7
+0.3
+0.3
+0.2
+0.2
+0.1
carbon source
L-Arabinose (C)
+0.3
+0.2
+0.3
+0.3
+0.1
temperature
LB 23C
+0.1
+0.4
+0.3
+0.1
+0.3
carbon source
D,L-Lactate (C)
+0.2
+0.4
+0.3
+0.2
+0.1
pH
LB, pH6
+0.3
+0.3
+0.1
+0.2
+0.3
motility
inner cut, R2A soft agar motility assay
+0.0
+0.4
+0.0
+0.6
+0.2
carbon source
D,L-Lactate (C)
+0.3
+0.3
+0.2
+0.3
+0.1
carbon source
D-Lactate (C)
+0.1
+0.4
+0.3
+0.2
+0.2
motility
inner cut, R2A soft agar motility assay
-0.3
+0.6
+0.3
+0.3
+0.4
stress
Chloramphenicol 0.0005 mg/ml
+0.4
+0.2
+0.1
+0.3
+0.3
stress
Fusidic 0.001 mg/ml
+0.5
+0.2
+0.1
+0.3
+0.3
carbon source
a-Ketoglutaric (C)
+0.5
-0.1
+0.4
+0.2
+0.3
temperature
LB 23C
+0.3
+0.3
+0.3
+0.1
+0.4
phage
phage 93.1
+0.4
+0.2
+0.3
+0.1
+0.5
pH
LB, pH10
+0.6
+0.3
+0.1
+0.5
+0.0
temperature
LB 30C
+0.2
+0.3
+0.3
+0.3
+0.5
phage
phage 93.1
+1.0
+0.1
+0.3
+0.2
+0.1
phage
phage 93.2
+0.6
+0.4
+0.4
+0.2
+0.3
temperature
LB 30C
+0.5
+0.3
+0.3
+0.3
+0.3
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