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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4132 and Ac3H11_4133 are separated by 167 nucleotides
Ac3H11_4133 and Ac3H11_4134 are separated by 99 nucleotides
Ac3H11_4134 and Ac3H11_4135 are separated by 216 nucleotides
Ac3H11_4135 and Ac3H11_4136 are separated by 38 nucleotides
Ac3H11_4132 - Transcriptional regulator, LysR family, at 388,157 to 389,059
_4132
Ac3H11_4133 - Aldo-keto reductase, at 389,227 to 390,267
_4133
Ac3H11_4134 - hypothetical protein; putative signal peptide, at 390,367 to 390,993
_4134
Ac3H11_4135 - secreted protein, at 391,210 to 391,497
_4135
Ac3H11_4136 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase., at 391,536 to 392,381
_4136
Group
Condition
Ac3H11
_4132
Ac3H11
_4133
Ac3H11
_4134
Ac3H11
_4135
Ac3H11
_4136
carbon source
pyruvate (C)
+0.2
+0.2
+0.3
-1.1
+0.1
nitrogen source
D-Alanine (N)
+0.3
-0.3
+0.1
-0.8
+0.4
carbon source
D-Gluconic Acid (C)
+0.2
+0.4
+0.2
-0.8
+0.2
stress
Cisplatin 0.005 mg/ml
+0.0
+0.1
+0.4
+0.6
-0.8
carbon source
D-Glucose (C)
+0.0
+0.5
+0.2
-0.7
+0.2
nitrogen source
Ammonium chloride (N)
-0.6
+0.2
+0.2
+0.7
-0.1
nitrogen source
L-Alanine (N)
+0.6
-0.2
-0.0
+0.8
-0.7
carbon source
D-Galactose (C)
+0.5
+0.3
+0.5
-0.7
+0.2
stress
perchlorate 10 mM
+0.3
-0.2
+0.1
+0.8
+0.3
carbon source
a-Ketoglutaric (C)
+0.9
+0.3
+0.5
-0.3
-0.1
lb
LB
+0.6
-0.4
+0.0
+1.0
+0.2
stress
Phosphomycin 0.06 mg/ml
+0.2
-0.1
+0.3
+1.1
-0.1
pH
LB, pH10
+0.6
+0.3
-0.2
+0.3
+0.6
carbon source
D-Galactose (C)
+0.3
+0.6
+0.3
+0.2
+0.2
carbon source
D,L-Lactate (C)
+0.6
+0.3
+0.5
+0.1
+0.3
carbon source
D-Sorbitol (C)
+0.4
+0.3
+0.3
+0.5
+0.2
carbon source
Glycerol (C)
+0.3
+0.3
+0.4
+0.7
+0.1
carbon source
D-Galactose (C)
+0.1
+0.3
+0.4
+0.6
+0.3
carbon source
D-Fructose (C)
+0.2
+0.3
+0.5
+0.6
+0.0
carbon source
D-Lactate (C)
+0.3
+0.2
+0.4
+0.6
+0.4
stress
copper (II) chloride 2 mM
-0.0
+0.1
+0.5
+1.2
+0.2
carbon source
a-Ketoglutaric (C)
+0.5
+0.5
+0.6
+0.1
+0.3
carbon source
D-Mannose (C)
+0.3
+0.4
+0.4
+0.6
+0.4
pH
LB, pH10
+0.3
+0.1
+0.3
+1.0
+0.4
temperature
LB 23C
+0.3
+0.5
+0.3
+0.4
+0.6
temperature
LB 30C
+0.5
+0.5
+0.3
+0.8
+0.4
phage
phage 93.2
+0.4
+0.3
+0.3
+1.1
+0.4
stress
Cisplatin 0.0025 mg/ml
+0.4
-0.0
+0.7
+0.7
+0.7
temperature
LB 30C
+0.5
+0.5
+0.4
+0.8
+0.4
motility
inner cut, R2A soft agar motility assay
+0.9
+0.4
+0.4
+0.9
+0.4
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