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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4119 and Ac3H11_4120 are separated by 597 nucleotides
Ac3H11_4120 and Ac3H11_4121 are separated by 45 nucleotides
Ac3H11_4121 and Ac3H11_4122 are separated by 191 nucleotides
Ac3H11_4122 and Ac3H11_4123 are separated by 40 nucleotides
Ac3H11_4119 - Integral membrane protein, at 371,908 to 372,600
_4119
Ac3H11_4120 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 373,198 to 375,720
_4120
Ac3H11_4121 - Fe-S OXIDOREDUCTASE (1.8.-.-), at 375,766 to 378,267
_4121
Ac3H11_4122 - Histone acetyltransferase HPA2 and related acetyltransferases, at 378,459 to 379,427
_4122
Ac3H11_4123 - Histone acetyltransferase HPA2 and related acetyltransferases, at 379,468 to 380,016
_4123
Group
Condition
Ac3H11
_4119
Ac3H11
_4120
Ac3H11
_4121
Ac3H11
_4122
Ac3H11
_4123
nitrogen source
L-Alanine (N)
-0.3
+0.3
+0.4
-0.5
+0.5
nitrogen source
Ammonium chloride (N)
+0.4
+0.5
+0.2
-0.3
+0.1
motility
inner cut, R2A soft agar motility assay
+0.5
-0.0
+0.1
-0.1
+0.5
phage
phage 93.1
+0.5
+0.1
-0.1
+0.6
+0.2
carbon source
L-Arabinose (C)
+0.2
+0.3
+0.2
+0.2
+0.4
carbon source
L-Arabinose (C)
+0.4
+0.1
+0.1
+0.4
+0.2
temperature
LB 30C
+0.2
+0.3
+0.4
+0.2
+0.3
stress
Nickel (II) chloride 0.8 mM
+0.1
+0.2
+0.2
+0.5
+0.3
lb
LB
-0.1
+0.1
+0.1
+0.8
+0.5
carbon source
Tween 20 (C)
+0.4
+0.1
+0.2
+0.3
+0.3
carbon source
succinate (C)
+0.5
+0.2
+0.3
+0.3
+0.2
nitrogen source
L-Arginine (N)
+0.2
+0.3
+0.1
+0.7
+0.0
temperature
LB 23C
+0.4
+0.2
+0.4
+0.2
+0.2
nitrogen source
L-Isoleucine (N)
+0.0
+0.4
+0.2
+0.4
+0.4
carbon source
D-Lactate (C)
+0.4
+0.3
+0.2
+0.2
+0.2
carbon source
D-Galactose (C)
+0.3
+0.3
+0.3
+0.2
+0.3
carbon source
D-Galactose (C)
+0.4
+0.2
+0.2
+0.2
+0.4
pH
LB, pH10
+0.7
+0.2
+0.3
+0.2
+0.2
carbon source
casaminos (C)
+0.4
+0.4
+0.3
+0.3
+0.3
stress
syringaldehyde 2.5 mM
+0.7
+0.1
+0.2
+0.2
+0.4
carbon source
L-Lactate (C)
+0.2
+0.4
+0.3
+0.3
+0.3
carbon source
L-Arabinose (C)
+0.2
+0.4
+0.2
+0.5
+0.3
carbon source
D,L-Lactate (C)
+0.5
+0.3
+0.3
+0.3
+0.3
nitrogen source
L-Threonine (N)
+0.3
+0.4
+0.2
+0.7
+0.1
stress
copper (II) chloride 2 mM
+0.3
+0.2
+0.0
+1.0
+0.2
temperature
LB 30C
+0.4
+0.4
+0.4
+0.3
+0.3
carbon source
D-Mannose (C)
+0.7
+0.4
+0.3
+0.3
+0.2
carbon source
a-Ketoglutaric (C)
+1.1
+0.3
+0.2
-0.2
+0.4
carbon source
D-Sorbitol (C)
+0.5
+0.4
+0.3
+0.6
+0.3
carbon source
a-Ketoglutaric (C)
+1.5
+0.3
+0.3
+0.0
+0.3
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