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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4118 and Ac3H11_4119 are separated by 14 nucleotides
Ac3H11_4119 and Ac3H11_4120 are separated by 597 nucleotides
Ac3H11_4120 and Ac3H11_4121 are separated by 45 nucleotides
Ac3H11_4121 and Ac3H11_4122 are separated by 191 nucleotides
Ac3H11_4118 - Far-related protein, at 371,003 to 371,893
_4118
Ac3H11_4119 - Integral membrane protein, at 371,908 to 372,600
_4119
Ac3H11_4120 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 373,198 to 375,720
_4120
Ac3H11_4121 - Fe-S OXIDOREDUCTASE (1.8.-.-), at 375,766 to 378,267
_4121
Ac3H11_4122 - Histone acetyltransferase HPA2 and related acetyltransferases, at 378,459 to 379,427
_4122
Group
Condition
Ac3H11
_4118
Ac3H11
_4119
Ac3H11
_4120
Ac3H11
_4121
Ac3H11
_4122
nitrogen source
L-Alanine (N)
+0.2
-0.3
+0.3
+0.4
-0.5
nitrogen source
L-Serine (N)
+0.4
+0.2
+0.3
+0.2
-0.2
lb
LB
+0.3
+0.3
-0.2
+0.2
+0.4
nitrogen source
D-Alanine (N)
+0.3
-0.2
+0.4
+0.1
+0.5
phage
phage 93.1
+0.1
+0.5
+0.1
-0.1
+0.6
carbon source
D-Gluconic Acid (C)
+0.4
+0.6
+0.2
+0.1
-0.1
nitrogen source
Ammonium chloride (N)
+0.4
+0.4
+0.5
+0.2
-0.3
temperature
LB 30C
+0.3
+0.2
+0.3
+0.4
+0.2
carbon source
L-Arabinose (C)
+0.5
+0.2
+0.3
+0.2
+0.2
nitrogen source
Uridine (N)
+0.3
+0.4
+0.2
+0.1
+0.3
pH
LB, pH7
+0.5
+0.2
+0.3
+0.2
+0.2
carbon source
casaminos (C)
+0.1
+0.4
+0.4
+0.3
+0.3
stress
Nickel (II) chloride 0.6 mM
+0.3
+0.4
+0.0
+0.2
+0.4
carbon source
D-Lactate (C)
+0.2
+0.4
+0.3
+0.2
+0.2
carbon source
D-Gluconic Acid (C)
+0.4
+0.8
+0.0
+0.1
+0.2
motility
inner cut, R2A soft agar motility assay
+0.4
+0.2
+0.3
+0.3
+0.2
carbon source
L-Arabinose (C)
+0.2
+0.2
+0.4
+0.2
+0.5
carbon source
succinate (C)
+0.4
+0.5
+0.2
+0.3
+0.3
carbon source
L-Lactate (C)
+0.3
+0.2
+0.4
+0.3
+0.3
stress
copper (II) chloride 2 mM
+0.1
+0.3
+0.2
+0.0
+1.0
pH
LB, pH10
+0.7
+0.2
+0.3
+0.4
+0.1
temperature
LB 30C
+0.3
+0.4
+0.4
+0.4
+0.3
nitrogen source
L-Threonine (N)
+0.1
+0.3
+0.4
+0.2
+0.7
nitrogen source
L-Arginine (N)
+0.5
+0.2
+0.3
+0.1
+0.7
carbon source
D,L-Lactate (C)
+0.4
+0.5
+0.3
+0.3
+0.3
carbon source
a-Ketoglutaric (C)
+0.4
+1.1
+0.3
+0.2
-0.2
carbon source
D-Mannose (C)
+0.3
+0.7
+0.4
+0.3
+0.3
carbon source
D-Sorbitol (C)
+0.3
+0.5
+0.4
+0.3
+0.6
pH
LB, pH10
+0.7
+0.7
+0.2
+0.3
+0.2
carbon source
a-Ketoglutaric (C)
+0.3
+1.5
+0.3
+0.3
+0.0
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