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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_4095 and Ac3H11_4096 are separated by 57 nucleotides
Ac3H11_4096 and Ac3H11_4097 are separated by 81 nucleotides
Ac3H11_4097 and Ac3H11_4098 are separated by 46 nucleotides
Ac3H11_4098 and Ac3H11_4099 are separated by 108 nucleotides
Ac3H11_4095 - Nitrogen regulation protein NR(I), at 349,095 to 349,721
_4095
Ac3H11_4096 - Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9), at 349,779 to 350,651
_4096
Ac3H11_4097 - Oligopeptidase A (EC 3.4.24.70), at 350,733 to 352,778
_4097
Ac3H11_4098 - FIG00932012: hypothetical protein, at 352,825 to 353,478
_4098
Ac3H11_4099 - Ribose 5-phosphate isomerase A (EC 5.3.1.6), at 353,587 to 354,273
_4099
Group
Condition
Ac3H11
_4095
Ac3H11
_4096
Ac3H11
_4097
Ac3H11
_4098
Ac3H11
_4099
nitrogen source
L-Histidine (N)
-8.8
N.D.
+0.1
+0.1
N.D.
carbon source
D-Glucose (C)
-6.6
N.D.
+0.2
+0.2
N.D.
carbon source
pyruvate (C)
-6.4
N.D.
-0.0
+0.2
N.D.
carbon source
D-Galactose (C)
-6.2
N.D.
+0.0
+0.2
N.D.
carbon source
D-Ribose (C)
-6.1
N.D.
-0.0
+0.3
N.D.
carbon source
D-Glucose (C)
-5.7
N.D.
+0.1
-0.0
N.D.
carbon source
D-Gluconic Acid (C)
-5.7
N.D.
+0.0
+0.1
N.D.
carbon source
D-Gluconic Acid (C)
-5.7
N.D.
-0.1
+0.2
N.D.
carbon source
D-Sorbitol (C)
-6.0
N.D.
+0.1
+0.4
N.D.
carbon source
D-Mannose (C)
-5.4
N.D.
-0.0
+0.1
N.D.
carbon source
D-Galactose (C)
-5.4
N.D.
-0.3
+0.6
N.D.
carbon source
D-Ribose (C)
-5.3
N.D.
-0.0
+0.2
N.D.
carbon source
D-Fructose (C)
-5.0
N.D.
-0.1
+0.2
N.D.
carbon source
D-Galactose (C)
-5.0
N.D.
-0.1
+0.2
N.D.
carbon source
pyruvate (C)
-4.7
N.D.
-0.1
+0.1
N.D.
carbon source
L-Arabinose (C)
-4.7
N.D.
+0.0
+0.2
N.D.
nitrogen source
Uridine (N)
-4.8
N.D.
+0.2
+0.3
N.D.
carbon source
L-Arabinose (C)
-4.5
N.D.
+0.1
+0.1
N.D.
carbon source
L-Arabinose (C)
-4.4
N.D.
+0.1
+0.4
N.D.
carbon source
D-Fructose (C)
-4.2
N.D.
-0.1
+0.4
N.D.
carbon source
Glycerol (C)
-4.5
N.D.
+0.2
+0.3
N.D.
carbon source
D-Fructose (C)
-4.1
N.D.
-0.1
+0.3
N.D.
carbon source
L-Lactate (C)
-3.5
N.D.
-0.1
-0.0
N.D.
nitrogen source
L-Proline (N)
-3.6
N.D.
+0.2
+0.1
N.D.
carbon source
pyruvate (C)
-3.1
N.D.
+0.2
+0.2
N.D.
nitrogen source
L-Serine (N)
-3.1
N.D.
+0.3
+0.3
N.D.
carbon source
a-Ketoglutaric (C)
+3.2
N.D.
+0.3
+0.3
N.D.
motility
inner cut, R2A soft agar motility assay
+3.9
N.D.
-0.3
+0.2
N.D.
motility
inner cut, R2A soft agar motility assay
+3.7
N.D.
-0.3
+0.6
N.D.
motility
inner cut, R2A soft agar motility assay
+5.5
N.D.
-0.6
+0.4
N.D.
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